Detailed information on CNT0002349 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002349

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RMWSTIQPEEQNTTPIALLLACQERVYLY*

>peptide 2 (32 aa)
MVMTKKKILRLQSYPEGLNQKKRIPDPVNAAM*

>peptide 3 (46 aa)
MQGPQAKARSQFLQSNHHGEISQAQNCLCLIPFRCVGIGCTTYPCI*

>peptide 4 (52 aa)
MLTRYYLLVISLTKTDYICYFPILRKQHTKIPKIQRISFKRKKEREKKKVEF*

>peptide 5 (41 aa)
KNVVDYPARRAEYNTDSTVVSMPRTSVLVLTALDLLRPLHS*

Sequence

>CNT0002349
TAAGAATGTGGTCGACTATCCAGCCCGAAGAGCAGAATACAACACCGATAGCACTGTTGTTAGCATGCCAAGAACGAGTGTACTTGTACTGACCGCTCTG
GACTTGTTGAGACCATTGCACTCATAGTCACGAGGTTCACTAGAAAGCCCCGTGTAGAGCACACATAAGCACAGTAAAGAGAAATCACAGCAGAAGGCAA
CAAGCTCCCATTCACCTGTTTTTGCACACCAATTATTATTTATTTTTTCAATAATAAAACTAAATCAATACACAGGTCCACAAGGACAAAACCAAGTACC
ACACTTTCTTTACAAACCTATCAAATATAATTCCCAAGGCACCAAATAAAATTGAGGAATAGAAGGGCATTATTCAAAGTAATTTGCTGACCTCATTTCT
ACTTTTGGTCTACAAGTTATGCTAATAAACAATTCTTAGGTCCTACAATGTACTCCAATAAATAAATATGTTAACAAGGTATTACCTGCTGGTAATATCC
CTGACCAAAACTGATTATATCTGTTATTTTCCAATTTTACGTAAACAGCATACCAAAATACCAAAAATCCAGAGAATTTCATTTAAAAGGAAAAAAGAGA
GGGAGAAAAAAAAAGTTGAGTTTTAACCTTGTAATCATTCCTACAAATGTTGCTAGGAAGGAGGCAGGTATGAGAGCTACTCTGGGTTAAGGATTAATTA
GTTTGATACATATCAAGATAGTAAGCACAAAACCACAGAAAAATCTAAATATGACGTGAGTTCATAAAAGAGAAAGATATGTGGCATTCATTAAAAGAAT
TATCTTTCAGATGATGTTTCTTTCATGACATTTCCTCTTCAACATTAAGCTACATCTTCCAACTTTTTACCACTGCATCATTGCTATATGTAGATTTTTG
TTAATTGTCATTTAACAACTCATCCAGAAAATTAATAATTTTCCTTTACTAAGAGAAATCATGTGTCCCACTACCAAACTTAAGTTTGAGATATGACTAC
CAGTAAACTAGCAGAAAGCCACAAGCATCTTCTACATTGTCAAGGAAGCCACCAAAAGGCTACAGGATTTTAGGACTTTATTAAGCATACAATACAATAT
ATTATTGGAAGTTGCAGAGCCCTCAGATGTTCTCTCATCACCTAGCAATTCATATTGCACAAGAGCATTGAATATAATGAGTTTCAATTACTTAAAGCTT
TATCTAGTCTTTACCTGAGGATGTAAGGCAATAATTGCAAACACAAAAGCAAGAATCATGGTCATGACAAAGAAGAAGATATTGAGGCTACAATCATATC
CGGAAGGGTTGAACCAAAAGAAAAGGATTCCTGACCCTGTAAATGCTGCAATGTAGCATCCAACTGATACAGCAAGTAAAGCAATATACCATATACTAAT
ATTACGGCATCTGGAAGGAAGAATGCAAGGACCACAAGCAAAAGCCAGATCACAATTTTTGCAGTCCAACCACCATGGTGAAATTTCCCAAGCTCAGAAC
TGCTTGTGCTTGATACCATTCCGTTGTGTAGGTATCGGATGTACCACCTATCCCTGTATTTAAGAATTAATATACTATCACGTTAAAAGGGAAGAATCCT
CAAATGCTAGCACAGAAAAAGGCTTCCAAGGATGCAAGACATTAATTCATTCCACGTACCATGTACATTTTTTTTT

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G28010.1 Uncharacterized protein protein coding CNT0002349 1391 780 CDS Trans
GLYMA13G28010.1 Uncharacterized protein protein coding CNT0002349 303 182 CDS Trans
GLYMA15G11012.1 Uncharacterized protein protein coding CNT0002349 1170 426 CDS Cis
GLYMA15G11012.1 Uncharacterized protein protein coding CNT0002349 1286 465 CDS Cis
GLYMA15G11012.1 Uncharacterized protein protein coding CNT0002349 813 294 CDS Cis