Detailed information on CNT0002361 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O22506|GLNA2_DAUCA, E-value = 6e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002361

Peptides detected in this lncRNA

>peptide 1 (59 aa)
QNIVTTTERIFENCLRTGRKKRLKSKLQWCRVGNVNISLGAKILTIGLLHYHHPVPVQC*

Sequence

>CNT0002361
CAAAATATTGTTACCACCACGGAAAGGATCTTTGAAAATTGCTTGAGGACTGGGAGAAAAAAAAGATTGAAATCAAAATTGCAATGGTGTAGAGTAGGTA
ACGTTAATATAAGTCTCGGTGCCAAAATTCTTACTATAGGATTACTTCACTATCATCACCCGGTGCCTGTCCAGTGCTAGATCCATCATAGTTCCATTTA
GGGAGCTCAGAGGGATGTTCAACAGGCTTTGATATTGTCTAAGAAATGAAAATGCATGAATATAGTTATCATGAATAGCATGAAATAATTCAAATGACAA
TGGTAGGAATAATTTCTCTTAGCCTATTAAGAACATTATAAATAACATACTCTTGATTTACTGCGCACATCAATTCCTGTCCCCCC

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G33990.1 Uncharacterized protein protein coding CNT0002361 796 387 CDS Trans
GLYMA12G12160.1 Uncharacterized protein protein coding CNT0002361 832 386 CDS Trans
GLYMA13G28180.4 Glutamine synthetase protein coding CNT0002361 886 387 CDS Trans
GLYMA13G28180.5 Glutamine synthetase protein coding CNT0002361 886 387 CDS Trans
GLYMA13G28180.6 Glutamine synthetase protein coding CNT0002361 886 387 CDS Trans
GLYMA15G10890.2 Glutamine synthetase protein coding CNT0002361 1050 386 CDS Cis
GLYMA15G10890.5 Glutamine synthetase protein coding CNT0002361 1050 386 CDS Cis
GLYMA15G10890.6 Glutamine synthetase protein coding CNT0002361 1050 386 CDS Cis