Detailed information on CNT0002364 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C690|BH122_ARATH, E-value = 5e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002364

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MCRIISASGENKEGKGLVRIKWYPLCNASWVSGTAPFGTDFA

Sequence

>CNT0002364
GCTTCTCGTGTGAACACGTACACTTTGCATGACAATCTGAAAGTGTCTATATAGACATGTTGGAAGAAAATAAGCGAATTATGGGTAAAATTCCACAGTA
ATAAATGACACATTGACAATGTTGATAGCTAAGATAACTTGGCTTTTTAAAATACCTGAACTTGCTTTTGAAGGTCTTTGATGTAATCCACAGCCAAGTC
CAACATATCAGCTGTGTTAGTTTGCTGAAGAGGGAAACAATCAACACAAACTGTGGCGTATGAGCAATGCAAAAGTTTTAAGCCAGTAATCTTACCTTGT
CCATGTTTGGGACAAGATCCTGAAGTTTCCTCATACGCTCACTAATTTTAGTTCTTCTAACCTGAAGGCAGTTTCCATAAGAATATCAAACAAAAACACA
GCTCAACTGTGGGTACCCACTGATGCTTTCCATATTAGAGAAGTGATGTGGGGAAATCCGGTTGTCTATTTTAGGAGTAATTATTACATGGTCCCATGAC
CACATCTTGTCCAGTCTCTACCTAACATGCAATCACATTTTTTCAATTTACTAAAAATAGTTAATAATGTGTCGTATAATTTCTGCTAGTGGGGAAAACA
AAGAGGGGAAAGGTTTGGTTAGAATAAAATGGTACCCTCTCTGCAATGCTTCTTGGGTGAGTGGCACAGCCCCGTTTGGCACGGATTTTGCA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA13G41670.1 Uncharacterized protein protein coding CNT0002364 287 101 CDS Trans
GLYMA13G41670.1 Uncharacterized protein protein coding CNT0002364 1021 596 CDS Trans
GLYMA15G03740.4 Uncharacterized protein protein coding CNT0002364 1918 692 CDS Cis