Detailed information on CNT0002382 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O80719|Y2706_ARATH, E-value = 1e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002382

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.021.912.50901.9450.8142.550.5980.3333.7281.4481.8992.4591.8652.639leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RVLLSFQQQHMFCFFSKTATCLLFLKAPKQLVPEQAKSHPSKLGYTKTQ*

>peptide 2 (42 aa)
VFCFLFNNNTCFAFFPKQQHVFFFLKHQNSWCRSKPKAIPLN*

Sequence

>CNT0002382
CGTGTTTTGCTTTCTTTTCAACAACAACACATGTTTTGCTTTTTTTCCAAAACAGCAACATGTCTTCTTTTTCTTAAAGCACCAAAACAGCTGGTGCCGG
AGCAAGCCAAAAGCCATCCCTCTAAATTAGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCAC
CCAAAGCTGTTGCTAAGTATAAGGTCAGTCTGGCCCCGGGGAGCGGGTGTATTGAGGTAAATTTACAGCTCTGCCTCTGCTCCGAAAGAGCATTCTCCAA
TAACGGTTTCACTCCTTCTGTCGCACCGCTGCAGATAAAAAGAAAGATTCTTTACCAGCTCTAAGAGATATCAGAGAGCGATGCATCAATCAACTTGAGC
AAATGCGATCTGACCACATGAGGAGGCTTAACCCAAC