Detailed information on CNT0002390 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q41229|PSAEB_NICSY, E-value = 3e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0010879, E-value = 1e-19 (S. tuberosum)

Expression of CNT0002390

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4390.5280.1806.2788.14812.1373.6651.5050.5160.3740.2040.7060.6020.243leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213

Sequence

>CNT0002390
GGTAAAGATATGAGCAACTGGACACAGAATGTAGTTCATAGAAAATAGAAATCAAGGGGGTAGATAACAGAGAGAATATGATACAAATTCTTTTTTGTTT
TTGACATAAAAAAACCTTAGGCTAGTAACTGCGATAGCATGACCAGAATCAAAATTACAAATAAATTAGACTCATTCCACTTCCACAATCTCATCCAAAC
ATAGTTGTTTGTTGATACATTGGCATAGTTGACTTTGTTGAATCGAACCACAACAGGGTAGCGAGTGTTGGGGTCCTGCACAACAATAAAACAGGAACTG
AGTTTGCATAATGCATGGGATGGTAGAAAATTGAGAGGGTATGCATTAGAGTGAGTTTAGGGGCACTAACCTGATCAACAGCAACCACTGAACCGGTGCC
TTTGTACCAGTAAGATTCCTTCCTAAGAATCTTCACCTGTTAATTGTAAATAAGAATTAGAAACTACCCTTGTTGCTGGGCAAGTGGGCAACTAATTTAA
TACAAATTTCAACTTTCAAGCTATTTACTAACACAAAGTCTCAAATGAATAAAACAGACAAGTTCATCACTGTCCTCTGTTCCTACGCATCAAATAACAT
ACTTTCTATCTAACATACTTTTTTGAACATATTTTTCATTACTGATTGAAACTTATTGGCAAATCATAAAATTGTAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G04780.1 Uncharacterized protein protein coding CNT0002390 1246 483 CDS_UTR Cis
GLYMA10G04790.1 Uncharacterized protein protein coding CNT0002390 1484 673 CDS_UTR Cis
GLYMA13G19170.1 Uncharacterized protein protein coding CNT0002390 792 501 CDS_UTR Trans
GLYMA13G19190.1 Uncharacterized protein protein coding CNT0002390 802 489 CDS_UTR Trans
GLYMA13G19190.2 Uncharacterized protein protein coding CNT0002390 802 489 CDS_UTR Trans