Detailed information on CNT0002395 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B9HTK2|CSPLI_POPTR, E-value = 7e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0035548, E-value = 2e-06 (C. reinhardtii)

Expression of CNT0002395

Peptides detected in this lncRNA

>peptide 1 (43 aa)
FSVLAIDVPAALADNSRYANTCTTTLTHISHSSNNYYSSILSF*

>peptide 2 (41 aa)
LQRPRHRRPRRARRQQQVREYLHHHPHTHQPLIKQLLLINS*

>peptide 3 (45 aa)
MCSIKVVRDRKRANSKHGRDKGVVAPNLLSFHFLLLPSFFLFLEL*

>peptide 4 (107 aa)
MKTEEAREKEKELRRNTRISKLKRRSLCSATVEWKRGLCDGEQLLSPPLRRGWGDLMLQLLSFEVRTHYFLVLIFILFIIMAKKEEGVTGEREREICVCV
TFNLTFG*

>peptide 5 (64 aa)
SASSPSTSPPRSPTTAGTRIPAPPPSHTSATHQTIITHQFLVSDLVMPEVEPYLQHFGKQCYAS*

Sequence

>CNT0002395
CTTCAGCGTCCTCGCCATCGACGTCCCCGCCGCGCTCGCCGACAACAGCAGGTACGCGAATACCTGCACCACCACCCTCACACACATCAGCCACTCATCA
AACAATTATTACTCATCAATTCTTAGTTTCTGACCTGGTCATGCCCGAAGTCGAACCATATTTGCAACACTTCGGGAAACAGTGTTACGCCTCGTGAAAT
TTCCCACACCGACGCGCCCATTTCGAACACAGAGTACACCGCCACTATCGCATTAGCCGCCAGAAAGAATCTGAACCGATTTCGCTGACTTACTTTCTAA
TTTCAACACGAATTCATAAATTAGGTCTGAAATAGTAACTAGTAAGAGTACCTGAAGGTATCGTAGTGGTTCCAGTGAGGAGAATAGGAGCCACGAGTGT
TGGTGAGCATGAAAACGGAGGAGGCGAGGGAGAAGGAGAAGGAGCTGAGGCGGAACACGAGAATAAGCAAGTTGAAACGCCGTAGTTTGTGTTCCGCCAC
CGTGGAGTGGAAACGGGGGTTATGCGACGGCGAACAACTGTTATCGCCGCCGTTGCGAAGAGGCTGGGGTGATCTCATGCTTCAATTACTAAGCTTCGAA
GTTCGAACGCACTATTTCCTTGTTTTGATTTTCATTTTGTTTATTATTATGGCGAAGAAGGAGGAAGGAGTCACGGGAGAGAGAGAGAGAGAGATTTGTG
TGTGTGTTACTTTTAATTTAACTTTTGGTTAGAAAAGAAACTGCGTGGAATGTGTTCGATAAAAGTTGTTCGAGACAGAAAGCGTGCTAACAGCAAGCAT
GGCCGTGACAAAGGTGTGGTCGCTCCTAATCTACTCTCCTTTCATTTTCTTCTTCTTCCTTCTTTTTTTCTTTTTCTAGAATTATAATAATGATAAAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G43526.1 Uncharacterized protein protein coding CNT0002395 2580 880 CDS_UTR Cis
GLYMA20G23260.1 Uncharacterized protein protein coding CNT0002395 1514 774 CDS_UTR Trans