Detailed information on CNT0002411 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SR13|FLK_ARATH, E-value = 3e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002411

Peptides detected in this lncRNA

>peptide 1 (115 aa)
VNMSWTITFWLRIMNTSLILDNILFLSIVCILYYKLQIIYLEYMTYNPQQSNQSITHCSNFGIGHSMPLFGIVNYAQTYSIKELTSGKGENYKSLIARRV
QDTKHKINPNTDSTF*

Sequence

>CNT0002411
GTGAATATGAGTTGGACGATAACTTTTTGGTTAAGAATTATGAATACATCTTTAATTTTAGATAATATTTTATTTTTAAGCATTGTGTGTATTCTATACT
ATAAATTACAAATTATTTATCTTGAATATATGACATATAATCCTCAGCAAAGCAACCAATCCATTACCCACTGTAGCAATTTTGGGATAGGTCACTCAAT
GCCACTATTTGGTATTGTTAACTATGCGCAAACATATTCAATAAAAGAATTGACGAGTGGGAAAGGGGAAAACTATAAAAGCTTAATTGCAAGGAGGGTG
CAGGATACCAAGCACAAAATCAATCCAAACACAGATAGCACATTCTAATAAGCCTAAGGATCAATAAGAAATATGCATAATTTGCTTGAAACAGTGAATA
TCCAAGATTATCCATCACTGCATGAATAACAAGAAACTGAAAAAGTATACTCACAGCTCTTTCTGAAGTTCCAGGAGGACCATCGAGAATTTTTATACGA
GCCTTAGTGTCTTCGGTAATTTTCCTAATAAACTCACCTTTCCGGCCAATAATACTGCCAACCTTTTGCACAGGAACCAACATCCTAAAAACATTCTCTC
CAGGCCACCCTGGCCACTTCTTTACTTCACCTCCTTTCAAATCCTCCTCAGGTCCCCGCTTT

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G15850.3 Uncharacterized protein protein coding CNT0002411 1045 459 CDS Trans
GLYMA02G15850.4 Uncharacterized protein protein coding CNT0002411 1045 459 CDS Trans
GLYMA10G03910.1 Uncharacterized protein protein coding CNT0002411 1274 458 CDS Cis
GLYMA10G03910.2 Uncharacterized protein protein coding CNT0002411 1274 458 CDS Cis
GLYMA10G03910.3 Uncharacterized protein protein coding CNT0002411 1274 458 CDS Cis