Detailed information on CNT0002412 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SR13|FLK_ARATH, E-value = 4e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002412

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.2990.4800000000000.2400leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.0250.050.0750.10.1250.150.1750.20.2250.250.2750.30.3250.350.3750.40.4250.450.4750.50.…0.525

Peptides detected in this lncRNA

>peptide 1 (38 aa)
LDQISQVFFFNYYYCSDFKNVFQASVSGSVARHQSTKF*

>peptide 2 (44 aa)
IWIKFHKFFFLIIIIVVTLRMFSRQVFQEVWQDTNRPSSEVTRE*

Sequence

>CNT0002412
ATTTGGATCAAATTTCACAAGTTTTTTTTTTTAATTATTATTATTGTAGTGACTTTAAGAATGTTTTCCAGGCAAGTGTTTCAGGAAGTGTGGCAAGACA
CCAATCGACCAAGTTCTGAAGTTACCAGGGAGTGAACGCTTCTTGCCACCAAAATCTGCACAGACTATTTGATTCTTAAGTCAAAAAACAACATTTCAGC
CATTGTAAATGCTCATTGCTGTTTCCCTGCAACTTGAAGTTTGGTTCTTCAATTTGAAGCCACCTTAGTCATTCATATTAGCTGACAACCTCTCTTTCTG
AAGTTCCAGGAGGACCATCGAGAATTTTTATACGAGCCTTAGTGTCTTCGGTAATTTTCCTAATAAACTCACCTTTCCGGCCAATAATACTGCCAACCTT
TTGCACAGGAACCAACATCCTAAAAACATTCTCTCCAGGCCACCCTGGCCACTTCTTTACTTCACCTCCTTTCAAATCCTCCTCAGGTCCCCGCTTT