Detailed information on CNT0002413 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LMN4|LSM3A_ARATH, E-value = 5e-23

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002413

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.1831.8762.943.4090.2970.3730.7310.6854.8862.5647.048.8513.8842.1383.631leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MASEEESAVKEPLNLIWLSLDERIYVKLRSDRELRGKLHTTKRTVPFLFVRGDGVILVSPPLRTT*

>peptide 2 (53 aa)
MLSMADDGTQWKAKILPYKHAVEAYGTAMADLPSQIIYGGWQKNCHAILPWQP*

>peptide 3 (53 aa)
MMEHSGRPKFCRISMPLRPMALPWQTSLHKLFMVVGKKTVMPFCHGSHSAVIK*

Sequence

>CNT0002413
ATAAAAGAGAAAGAACAAGAAAATAAAATTCACTGAGAAAACATTGAACCAAGAACATAAACACAAGCACTGAAGAAACAGAGTGAAGTAGTAAATTGAT
GGCTTCAGAAGAAGAGAGCGCTGTGAAGGAGCCTTTGAATCTCATATGGCTTAGCCTCGACGAGCGTATCTACGTCAAGCTCCGTTCTGACAGAGAGCTT
CGCGGCAAACTTCACACTACAAAGCGTACAGTTCCTTTTCTGTTTGTTAGGGGAGATGGGGTGATATTGGTTTCCCCTCCACTGAGGACTACATGACATG
AACCAATGAACTATGTGATCAGTTTAATAACAATTGTCACTGTTTATGAAATTGTATATCTATAACTTAAGTAGTGATCTCATTTGTTATGATTAGAATA
GTTACTTAATTGGCTTGTGTGCTAGAGATTTCAGTTAGACAGTCAGCTTTTTATTATCTTTATAGCACGAGAGAATCATGGCATGCTCATAAACAAGGAT
TTTAACTATCAAGGGAGCTTAATTCATTTGGAACAATGCATGTGAGTTGTTCCCTTGGTACCTGTCATTGACAATGTTATCAATGGCGGATGATGGAACA
CAGTGGAAGGCCAAAATTCTGCCGTATAAGCATGCCGTTGAGGCCTATGGCACTGCCATGGCAGACCTCCCTTCACAAATTATTTATGGTGGTTGGCAAA
AAAACTGTCATGCCATTCTGCCATGGCAGCCATAGCGCTGTCATTAAATAACACTGATCTTAGATTCCTATAAATAAATAAAAAAATTTAGATGCATGGT
GGAGTTGTTGGTACATATTAGTAGCTCCATATAAAGTGCAGGCCATGATTCTTGATGTTGTCTCTTCAAGTGTTGTTGCTTTTGGTTACAATAGAAGGTT
TGTCTGTGGGGATGATATTTAAGTTCGGCTAAAATATCTTTCTTATCCTCGTG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G33480.2 Uncharacterized protein protein coding CNT0002413 146 87 CDS Trans
GLYMA04G33490.1 Uncharacterized protein protein coding CNT0002413 121 91 CDS Trans
GLYMA20G27241.1 Uncharacterized protein protein coding CNT0002413 148 93 UTR3 Trans
GLYMA20G27241.3 Uncharacterized protein protein coding CNT0002413 148 93 UTR3 Trans