Detailed information on CNT0002414 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C9W5|HPR1_ARATH, E-value = 3e-69

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002414

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MGETINVRLQHIGNLPSFLHKQIQFDQLQLHQLFAP*

>peptide 2 (29 aa)
MDYTIEHHNQLEVTNTSKLYNVLSCMILS*

>peptide 3 (28 aa)
MNSSASTILLAAAKVSEAANSAVVSVSTP

>peptide 4 (43 aa)
TQGFCINNAWACSWWSSILIEEWFHLIGIKPNWVPFNLPLHIL*

>peptide 5 (50 aa)
MYIKISIIKFLLYLPPGGPHPWLLPFSKSLGFHHLLSRMRHRLQCGKKNH*

>peptide 6 (44 aa)
PRAFALTMLGHAAGGRAFSLRNGSTLLASNQTGYPLTFPCTFYN*

>peptide 7 (30 aa)
MQCGVPQWHSSTLQAQVSCRALPKIIFNFT*

Sequence

>CNT0002414
ACCCAGGGCTTTTGCATTAACAATGCTTGGGCATGCAGCTGGTGGTCGAGCATTCTCATTGAGGAATGGTTCCACCTTATTGGCATCAAACCAAACTGGG
TACCCTTTAACCTTCCCCTGCACATTTTATAATTAAGGACTAAGACACTTAGAATTTGCATTGACCACAGTAATAAGTCCAACATGTAGAGACACATACC
AGCACGTTTAGAGCTGCTAGTGTAGCCATTCCCTCACGAGTCCACTGCAAGTAGATTTACATGAAATAGTTGAAAGTGAGTCAACCATTAAAGACTTTTT
TAATACCGAAATTTCTTTATATACGGGTTAGGATTTATAATAATTACCTTGGAGGCAGATGCAATGTGGGGTACCACAATGGCATTCTTCAACTCTGCAA
GCCCAGGTTTCATGTAGGGCTCTTCCTAAAATAATTTTCAATTTCACATAGAGACTAAAAAGGTGTTTTTGTTGTAATATTGAATCCAGTTATTGAGAGA
GAAAAGAAGGGATCAATTACCTCAAACACATCAAGGCCTACTCGAAACATTGGGTTATGTTTTAAATGCTCCACAAGTGCAGCTTCATCAATAACAGGCC
CTCTACTGCAATTTATAAGAATTGCTTCCTGCATAGGGGACATCGTCATTAACAAAAAAAAAACCAATATGCATCGCTTGATTTTTGTACATAATTTAGA
GCAAAATCATGTTGCTTAAATTCTTACCTTCTTCATCTTAGCTAGTCTTTCCTTGTTGACTAGATGATAAGTGGTTTTATCCAAGACAGGATGAAGACTA
ATCTATAGAAGCAAACATGATAAACCATGTTGTTTGGAATAGTCATATGTAGCATGTTACAAAATGTACATTAAAATTTCCATAATCAAATTCTTACTAT
ATCTGCCTCCTGGAGGACCTCATCCATGGTTGCTGCCCTTTTCCAAGTCACTGGGGTTTCACCATTTGCTTTCAAGAATGCGGCATAGGCTGCAATGTGG
AAAAAAGAACCATTAGTTCAGACTTCATAGTAATTTGGTTTATAAATAGGACTTGGTAGGAACATGCCTGTGACAAACTTTTCTAGTCGTGTGGACTGGT
AGAGATCATAATAAATTAGGTTCATCTTGAACCCTTCAACCTGATAGTGATACAGTGGAAAACAGTTTTTTGTCATCAACAGAGCAAAACCATTATATGG
ATTATACTATTGAGCATCACAATCAACTTGAAGTCACTAACACCAGCAAACTATATAATGTACTTTCTTGCATGATTCTAAGTTAAAAGTTTTTGCAAAG
CACCCTTGCCAACTTTAAATATGATGATCATATATTTATATGAATAATCAAGTATCAACTATCACTAGCTTAAGACATTACAGCCCAGGTGCTCTTCCAA
TATTTTGACATAAAAGAAAAATCAACTAAAGAAACCAATACGTCAGTAGTCAGAAACCAAGTCATTTTTATGAGTGACAAGTTTAGCATACAACAAATTC
AACTCCATCAAATGAATATGAAATGGGAGAGACGATCAATGTGAGACTGCAACATATTGGAAACTTACCATCATTCTTGCATAAGCAGATCCAATTCGAC
CAGCTCCAATTACACCAACTGTTTGCCCCTTGAGCAAGTTTCCAACAAATCTGCCACAGAAACAAAGAAAAAACAGTTTATTCCGGCCTTCTGAAGAGTG
TGTTACTTACAATTCAGTGTATGGAAACTGACCGAATGATGGTAATAATTTTCATGGTATTTAACATTAATCTTCACAGAAAGAAACAAGAAAGGAATGC
GTAATAAAAAAATTTCATACAGATGAGGTAGCCATCCATCATATAATCCTGCTCTCATGAACTCATCTGCCTCAACTATCCTTCTAGCAGCTGCCAAAGT
TAGTGAAGCTGCCAACTCTGCTGTTGTCTCAGTGAGCACTCCC

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G24682.1 Uncharacterized protein protein coding CNT0002414 878 540 CDS_UTR Trans
GLYMA10G24682.1 Uncharacterized protein protein coding CNT0002414 540 333 CDS Trans
GLYMA10G42800.1 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 5324 1943 CDS Cis
GLYMA10G42800.2 Peroxisomal hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 5324 1943 CDS Cis
GLYMA20G24200.1 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 1111 495 CDS Trans
GLYMA20G24200.1 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 2005 1122 CDS Trans
GLYMA20G24200.1 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 574 333 CDS Trans
GLYMA20G24200.2 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 1111 495 CDS Trans
GLYMA20G24200.2 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 2005 1122 CDS Trans
GLYMA20G24200.2 Putative NADH-dependent hydroxypyruvate reductase; Uncharacterized protein protein coding CNT0002414 574 333 CDS Trans