Detailed information on CNT0002417 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002417

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGMGGLGRNIHKQNMLFLPYTSHTTVFPLFLPLPLTSAAFPHLNPPSHLIIVM*

>peptide 2 (31 aa)
MIIIPELKFKQMPNQPEELQKPNLYYGYKQN*

>peptide 3 (31 aa)
MLKSMRSIVFNLTIYVLLAYANCSKPLKFRV*

Sequence

>CNT0002417
TTTTTTTAAGTAAATGATTAAAATAAGAAGAAAGTTGATAAGATCTTTAAAATAAGTAAATATTTATGTTTTTTTATAATAAAAAAAGTGGATGTTTGCT
TATTATTTTTTAATAAATAATAGAGAATAAGCAGGAGAGGGAGACAGTGAGGGTCCATTATCGGATAGGATTCCATTTCCTCTGCCAAAACTTTTGTCCA
CATCCTATGTCAGGAATCTCATCATACCCACCATTTTGATTCCACTTTTGCATCATTATTTAATAAACATATTGAGAGGCTCTCTTTTACCTTTGTCCAC
CTTCCTTGTATTGTAATTACAAGTTATACCACCAACTACCCCCATTCAACCTCAACTCAAAAGGCTTCCTTCCTTGTGAATTGTGAGACATGAACATTGA
AGAAGAAAATAAGTTTTCTTCAGAGAGGGGAAAAGGGAGATAAAATTGGGGGAAGACATGGGTATGGGGGGATTGGGAAGGAATATCCATAAGCAAAATA
TGTTATTTCTTCCCTACACCTCCCATACCACTGTTTTTCCTCTATTTCTCCCCCTTCCCTTGACTTCTGCTGCCTTTCCACATCTCAACCCTCCTTCTCA
TCTCATAATCGTAATGTAACAACCATACATATGTTGAAGAGTATGCGTAGTATTGTATTCAATTTGACCATCTATGTTCTATTAGCATATGCCAATTGTT
CTAAACCTTTGAAGTTTAGAGTTTAGATCTCTCTCTTGGAGCAACAAATCTGGTATTGTCACTTTCTGATAATAAAGTTTTGTTGAATTTCTTTTAATTC
AAAGTTTGACTAATTATCGGATTAATTTTCACCACACAATTATTTTTTTATCCAACTTCTGAACAATTGAATCAACTGGCCCTATTACGTTTTGACTAAT
CTTTTATTAGACTGTTTGGATCTTTTGGACCGGGCCCATTAAGGACAATTGTTGTTAGGCAAATGATAATTATACCTGAACTAAAATTCAAACAAATGCC
AAACCAACCGGAGGAGTTACAAAAACCCAATCTCTATTATGGTTACAAGCAGAACTAGCAGCTAGTGCACTTGAATAATTGCAGCACCACGTTGTTGAGC
ATTGGTTATGAATTTCCCCATTCTACCTTGATAATGAAAATTGCAACAATACTTCAATAAAAACAAAATAATAATTTTCTAAAGCCATAACTCATAATTT
ACAATATTCCTCGTGTACCAAGCATCATCAGCATTATGACATTCTTTACATAAAAAACCTGAACGCTCAGTCTCATAAATTAGGCCTAGATGGAGCAAAT
TCATTCAATCTTAAATGGGGTTTGAGTGGAAGAGTGGCATGGGAGGGGTTTGAGTAACGGAGCTATAGAGGAGGAGGTGAGTAGCAGAGAAATGGGGTAA
GCCAAAAAAAATGAAAAACTGTCTCTGGAAAGTTAATTTGAAATTGGGAATGAATTAAAAGGGTATTTAGGAGAAAATATTGATAGAAAAAAAAAAGGAA
AAGGGTGGTATATTGATTAAATAAGGGAGGTAAAATTATCATTAGCCTTGTTGTTAATAATTTTAATTTTTCATTAATCTTGGCTAAAAGCCCACTCTGA
AAAACCCGC

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G00810.1 Malate dehydrogenase protein coding CNT0002417 132 75 CDS Trans
GLYMA02G00810.2 Malate dehydrogenase protein coding CNT0002417 132 75 CDS Trans
GLYMA10G00920.1 Malate dehydrogenase protein coding CNT0002417 140 75 CDS Trans
GLYMA10G00920.2 Malate dehydrogenase protein coding CNT0002417 140 75 CDS Trans