Detailed information on CNT0002420 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002420

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.716.6667.3351.3974.8757.2716.5897.5834.5385.0055.9894.7585.653.9443.544leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (81 aa)
EKLPMIFLLLSNLQCFSFLSHTKPSPSLSLRFLTSFSPFHFSPSPPLFISSLPLFWFSLLLRIKTRNFGRRWRAFVATHHN*

>peptide 2 (45 aa)
MSLIYLRMTYILTVTSIINKKRSQVKHRIKGILILFAFCFGYWLD*

>peptide 3 (61 aa)
MLKQEATRGLHFTIIFLYVQVVFYCLLRFLYSRICTLAWFFALVLKLSLSLINTFILHFNK*

>peptide 4 (33 aa)
MIGPGAVEILVKDLKVFDTFNTWLHYEYVEDKL*

>peptide 5 (79 aa)
KIAHDFSSIVKSTVFFFSLSHETLSLPFPQISHFLFSFPFLTFSPSLHLFSTPFLVFLTLTNQNPQLWTSLEGFRRYPP*

Sequence

>CNT0002420
GAAAAATTGCCCATGATTTTTCTTCTATTGTCAAATCTACAGTGTTTTTCTTTTCTCTCTCACACGAAACCCTCTCCCTCCCTTTCCCTCAGATTTCTCA
CTTCCTTTTCTCCTTTCCATTTCTCACCTTCTCCCCCTCTCTTCATCTCTTCTCTACCCCTTTTTTGGTTTTCCTTACTCTTACGAATCAAAACCCGCAA
CTTTGGACGTCGTTGGAGGGCTTTCGTCGCTACCCACCATAACTGACGAGGGGTGACCACTGGTAGCAAGGTGTATTAGGTCCAATTCATAGTACCTGAA
AGCACACTTTACTCAAATTGGGAGGAGGTGTTAGTAGTAGGCATGATCGGTCCAGGGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTCTTTGACACAT
TTAATACTTGGTTGCATTATGAATATGTTGAAGACAAATTATAGAAGACAAAGCTAAGCAGCAATTTTATATATCTACAAGCAGCAAGGGAATATGTTGG
AACAAATGGTGGGCACATAGGTTTGGAGCTGTTATGAGCTTAATTTATTTGAGGATGACTTATATTTTAACAGTCACAAGCATTATAAACAAAAAACGGT
CACAAGTAAAACATAGAATAAAAGGAATATTGATTCTGTTTGCGTTTTGTTTTGGATACTGGCTTGACTAGATATGTTTTCCTGGTCCGATGGAAATTTT
TGGATCGTTGGTTGATTTGAAGTTAGTAATATGCTGAAGCAGGAAGCTACAAGAGGTCTGCATTTCACGATAATATTTCTTTATGTACAAGTTGTTTTCT
ATTGTTTACTCAGATTTTTGTACTCTCGCATCTGTACTCTGGCTTGGTTTTTTGCACTTGTGCTAAAACTGAGTTTGTCTTTAATAAATACATTCATTTT
GCATTTTAATAAATAAAAAAATCTTTTGTC