Detailed information on CNT0002422 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q04050|NU4M_BRACM, E-value = 7e-83

BLAST vs NONCODE (A. thaliana):
NONATHT001131, E-value = 0.0

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002422

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.1360.1393.713000000.1330000.9320.377leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (191 aa)
MLEHFCECYSDLSGLILCPVQGSIIPLFIPNSRIRPIRLIGLCASLITFLYSPTPRIQFDPSTVKSQFVECLRWLPYENINLNLGIDDLSFFFVILTTFL
IPICILMGWSGMRSYGKEYITTSLIHEFLMIVVLRMLDPLLFYVLPESVLIPMLCGAEHLLFIGIKLFLCRRGSLVHKHSISGRTRPTQLR*

Sequence

>CNT0002422
GGGCATGCAAAATCGAGCAATTAATCTTATAAAAATTTCCTCAGGTCTCTAGAAATCTATAAAAATGAAAAGCCCGGGTAGAAGCACAAGAAAAAGGAGA
GAAGAAAAGTAGAAAAAGGAAGGGGGGAGGAGACTCGCCTCAATACTTCCCACTGGACGAGAGGCGCACCTAACCCACCTACCCACTCATCAATCACGGT
GTTCAGCTGACTTGCATTGATAGACCCCTATTGTATTGGAATCAGGCGCCCATCTTTTTACTGTTGTCAACTAATCACTTCCATGTTCGATTCTACTCTA
TGTTAGAACATTTCTGTGAATGCTATTCTGATCTAAGTGGTCTTATTCTGTGTCCCGTGCAAGGAAGCATTATTCCTCTTTTCATTCCAAATTCAAGAAT
ACGACCGATACGATTGATTGGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCCCCTACTCCTCGGATACAATTCGATCCTTCTACGGTCAAATCTCAA
TTTGTGGAATGCCTTCGATGGCTTCCTTATGAAAACATCAATTTGAATTTGGGTATAGACGATCTCTCTTTTTTTTTCGTGATATTGACCACATTTCTGA
TCCCTATTTGTATTTTAATGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTACATTACAACATCTCTAATTCATGAATTTCTAATGATCGTCGTGCT
CCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGTGTGCTAATCCCTATGTTATGCGGAGCTGAGCATCTTCTATTCATTGGGATAAAGCTT
TTCCTCTGCAGGAGGGGTAGTCTTGTGCATAAGCATAGCATTTCTGGTCGAACCCGCCCAACCCAACTAAGATGA