Detailed information on CNT0002442 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002442

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)00.2360000000.2880.2300.274000.653leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.050.10.150.20.250.30.350.40.450.50.550.60.650.7

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MWVTGRLDGNERAMAASVIDCVTAESLPDTNVSDRRLGLDSFCLGKILDSDECIFCQKNSSEISPDKNL*

>peptide 2 (45 aa)
QFHATGTTHQLLQHRRHATLNRLFNQTLQTPFFHLRKTHKELANG*

>peptide 3 (42 aa)
PNSMPPVPHTNSFNTGDTQLLTVSSIKPCRPPSFTCAKHTKS*

>peptide 4 (30 aa)
MYILSEKFVRNFARQKSVSKNPSEIYLSVI*

>peptide 5 (30 aa)
MGKKEKQNWSQEKYYEPLPNTNVSHRTARR*

Sequence

>CNT0002442
CCCAATTCCATGCCACCGGTACCACACACCAACTCCTTCAACACCGGCGACACGCAACTCTTAACCGTCTCTTCAATCAAACCCTGCAGACCCCCTTCTT
TCACCTGCGCAAAACACACAAAGAGTTAGCCAATGGGTAAAAAAGAAAAACAAAACTGGAGTCAAGAAAAATATTACGAACCACTACCAAATACAAACGT
CAGTCACAGGACGGCACGACGGTAGCGACGATGTGGGTCACAGGACGGCTCGACGGCAACGAGCGTGCGATGGCGGCGAGTGTGATCGACTGTGTGACGG
CGGAATCACTACCAGATACAAACGTGAGTGACAGAAGGCTAGGGTTGGATTCCTTTTGTTTGGGTAAAATTTTAGATTCCGACGAATGTATATTTTGTCA
GAAAAATTCGTCAGAAATTTCGCCAGACAAAAATCTGTGAGTAAAAATCCGTCAGAAATTTATCTGTCGGTCATTTAAATATTTTTAATGGAATACATTC
GGTGA