Detailed information on CNT0002448 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P28643|FABG_CUPLA, E-value = 5e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0014328, E-value = 2e-08 (S. tuberosum)

Expression of CNT0002448

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.5411.0860.22200000.4760.2652.120.2310.5041.3050.7420.6leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.4

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSHIDRSTRLIGFVDCYMLTDHMSSYLLVLFMSKCSRYLGYVD*

Sequence

>CNT0002448
GAATAATATGAGTTTGGAGGAAGCTGTTGCCGAAGAAATTGCCATGGCTGGTGGAGAATTTGGATAGAAAGAGGAGAGTGAAGAGTGAGGAGTGAAGAGA
GAAGAAGAGGATTGTGTTAGTGTAGTGTATTAAGTAATGTAAATAGTGTATACTTATGAGTCATATTGATAGATCCACGAGGTTGATCGGATTTGTAGAT
TGTTATATGCTTACTGATCATATGAGCTCTTATTTATTGGTGTTATTTATGAGTAAGTGTTCAAGATATCTCGGTTATGTTGATTGACTGAACTACATTA
ATTAATTTATTTGATTATTACTTTCAAATTGAGGCGTTTCGTGGACAAGCTCTTACCTTCGCGGGAGATGTTTAAGATGGGGCCAATGTGGAATCTATGA
TTAGAACTGCAGTTGATGCTTGGGGAACTGTTGATGTATGGTAAATAATGCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAATGA
CAGGAAGTTATTAATCTGAATCTCACTGGCGTTTTTCTTTGCATGCAGG