Detailed information on CNT0002450 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9C8K2|AB12G_ARATH, E-value = 4e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002450

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.653.6463.1660.9941.31.4511.7041.3313.4865.3973.4844.442.8611.4540.924leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLLYIGRDLYVFFKCVCENKYNSNILRLYPLLIL*

>peptide 2 (37 aa)
MTFKSIVGFPSFIEEMKVRLYYYYYIWTLIWEMSQVN*

>peptide 3 (66 aa)
MNLATAQIKATLVEKYRRSTYATRAKNRIQELSIDEGLQPPTQHGSQASWWKQLFNTDKEIICEHV*

>peptide 4 (183 aa)
MMKLVFYRERLNGYYGVAAYILANFLSSFPFLVLIALTSCTIMYNMVKFRPGINHFVFFFLNIYSCISVIESLMIVVASLVPNFLMGIITGAGIIGIMMM
TSGFFTLLSDLPKPVWRYPYLYISYGSCLLGQYRVRFHYGHPDVFDRILHITRGGISKASCGINLSKDIFAVCEGQISVEKIW*

>peptide 5 (49 aa)
WIALEKVKKSLTLIPFPFLTPQKPQKAPTLCLIFRTLCTLSSTVILACA*

>peptide 6 (53 aa)
MPQGQRTEFKNCLLMKGFNLQHNMEVKLVGGSNYLTLTKRSFVNMCRDVGYYW*

>peptide 7 (75 aa)
LDCLREGEEIPNPYSFSLSHTSKTTKSSDIVPDLQNTMYAFIDGYPCVRLMNLSGTISCSRNSLILDEIRLWLRL*

Sequence

>CNT0002450
ACTGGATTGCCTTAGAGAAGGTGAAGAAATCCCTAACCCTTATTCCTTTTCCCTTTCTCACACCTCAAAAACCACAAAAAGCTCCGACATTGTGCCTGAT
CTTCAGAACACTATGTACGCTTTCATCGACGGTTATCCTTGCGTGCGCCTGATGAATCTCTCTGGAACCATCAGTTGTTCAAGAAATTCTTTGATCCTGG
ACGAGATAAGGTTGTGGCTCCGATTGTAAGGTTCGAAAATGTTGACATAATAGCTGAGCCTTCTGCTGTATTGGTGTCACTGGATGAGTTCCAAACTCTC
TTTACTAGGATGTTCCAAATTCACCAGATCCTTTCATGAATTTGGCTACAGCACAGATTAAGGCAACACTAGTTGAGAAATATAGGCGTTCAACATATGC
CACAAGGGCAAAGAACAGAATTCAAGAACTGTCTATTGATGAAGGGCTTCAACCTCCAACACAACATGGAAGTCAAGCTAGTTGGTGGAAGCAACTATTT
AACACTGACAAAGAGATCATTTGTGAACATGTGTAGAGATGTGGGTTACTACTGGTGAGGATCATAACTTATATCATTGTATCCATATGTTTGGGAACCG
TTTATTTTGATGTTGGCTATAGCTACACTTCCATCCTGCCCCTAGATGCCTACGGTGCATTTATATCAGGATTTATGACATTCAAGTCAATTGTTGGCTT
TCCATCATTTATTGAAGAAATGAAGGTACGACTATACTACTACTATTATATATGGACTTTGATTTGGGAAATGTCACAAGTTAATTAATCTAAGCTGCTA
ATGTTTTCACTATTAATCTCCTTTGATTAATTTGTATATTGTGTTTATGCACAATACATGTTTAACACTTAGGCTTATTTAATTTGTTGACATGATGAAA
CTGGTATTTTATCGAGAAAGGCTTAATGGATACTATGGAGTAGCAGCATATATTTTAGCCAACTTCCTTTCTTCATTCCCATTCTTGGTTCTAATTGCTC
TGACATCCTGCACCATTATGTATAACATGGTGAAATTCAGGCCAGGAATCAATCACTTTGTGTTTTTCTTTCTCAACATCTACAGCTGCATCTCCGTAAT
AGAGAGCCTCATGATTGTTGTAGCTTCACTTGTTCCAAATTTCCTCATGGGAATAATTACAGGGGCTGGAATAATAGGAATCATGATGATGACCTCCGGA
TTCTTCACGTTGCTCTCTGATCTTCCAAAGCCAGTTTGGCGCTACCCATATTTATATATCAGTTATGGTTCTTGCCTTCTTGGGCAATACAGGGTGCGAT
TCCACTATGGTCATCCAGATGTATTTGATAGAATTTTGCACATAACTCGAGGAGGAATTAGCAAGGCATCTTGTGGCATCAATCTGAGCAAGGATATTTT
TGCTGTATGTGAGGGACAGATATCAGTGGAGAAAATATGGTAAAAAAGTCACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCATATGCCCC
AAGCTGCCCAGTGAACAAGTTTTTCCGCGGATCATGTTAATCACTGACTCTGTAATGAGTCATTTAAGTCAAGTGCAGTCGCAGGTACAGGTACCACCAG
TATAGAGATACCATCAAGTAGGAGGAGCCAGGTTAAAGTTGATAACTATGTTGCTATATATAGGTAGGGATCTTTATGTTTTTTTCAAATGCGTGTGTGA
AAACAAGTATAATAGTAACATATTGAGACTCTATCCATTGTTAATACTATAATACCCTACCCAAATTTACTCATTGTCATTCCTATATTTCACTAAATTT
GAAATTTATTTTTAAAATTTGAATTTGAACTTGTCCCTTTTGACAACGTTAGATTGAGCAACCTATTTTATCACCTCTAATAATAAATATGGGTAAGTTG
AGCATGGCAGGATAGCCTGCTTAACCCACCAAAAATGACGGGAGTAGGCTAATTGACTTAAT