Detailed information on CNT0002460 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016932, E-value = 6e-25 (S. tuberosum)

Expression of CNT0002460

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.6077.0025.13723.48617.2834.8248.80912.78510.0825.43310.2958.53810.7911.66319.108leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02468101214161820222426

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIVMQEQRLQKKFWTISRTQPKYHDEFFIYTEGS*

>peptide 2 (127 aa)
CFLWLRSLNQKRWYCEYSGRWSRASAFYFQRAILGVRIRSPKTQIESIRKWVVEHKLRTVGCLWLSGISGSIAYNWSRPNMKTSVKIIHARLHAQALTLG
ALAGAALVEYYDRNAGAKASKEILDNK*

Sequence

>CNT0002460
TGTTTTTTGTGGCTCCGTTCGTTGAACCAGAAAAGATGGTATTGTGAATACAGTGGGCGATGGTCACGTGCGTCAGCATTTTATTTTCAACGCGCTATTC
TGGGTGTTCGAATTCGCAGTCCTAAGACCCAAATTGAATCCATAAGGAAGTGGGTCGTCGAGCACAAGCTCCGTACTGTTGGGTGTCTGTGGCTCAGTGG
TATTTCGGGTTCAATCGCTTACAATTGGTCTCGACCCAATATGAAAACTAGTGTTAAGATCATTCACGCAAGGTTGCATGCACAGGCTCTTACGCTGGGA
GCATTAGCCGGAGCTGCACTAGTAGAATATTATGATCGTAATGCAGGAGCAAAGGCTTCAAAAGAAATTTTGGACAATAAGTAGAACGCAACCAAAGTAC
CATGATGAATTCTTTATATATACCGAGGGATCCTAGTACTAGCTAGTCATACCTGATATGATTATAGCAAAATTTGCAATTGGACTTGTACTGTACTCTA
TTCATTCTTAAAATAAAACACTACATTGAAATGTTAACACCATAACATGCCTGTGGCAGAGTGAATATATTTTTTTGTGTTGGAATGGATTACTTATAGT
GCTAGTTGCTTCATACATTTGCTAGCATTTTTTGTCAGTTCATAGTTATCGGAATAGGATTAGA