Detailed information on CNT0002464 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O82656|PTP1_ARATH, E-value = 5e-33

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002464

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0004.0460000000007.1064.72leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.5

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYVRKSLSASVCMLLNNWSANRSSLEILLSYFL*

>peptide 2 (38 aa)
MYKIRHYLFCIFIILHGLTMEFPIIHMLFVKFLKDYII*

Sequence

>CNT0002464
TGCATTCTGAATGCCCATCAATGATTACAATTCTTCAAATGAAAAGCCATAACTGTCCCGAATGATAGCTTCCGGTTAACTTTAATCTTTGGTTGCATGT
ACAAGATACGCCATTATCTGTTTTGCATATTCATCATACTACATGGCCTGACCATGGAGTTCCCAATTATACATATGCTGTTCGTGAAATTTTTAAAAGA
TTATATCATTTAGAACCAAACCTTGGCCCCATAGTGGTGCACTGCAGTGCCGATATTGGTAGAACTGGAACATATTGCACAAATTCACAACACAATTCAG
AGAATACTTGCTGGTGATATCTCTGCTGTAAATATTGCTGACACAGTCACTACGTTCAGGACCCAGCGTCTTAGAATGGCTCAGTACAATTTCTGCTATA
TAGCTATCATAGAAGAACTGGATGACCTTCTATCTCAACAGTAACATGAATAGAAGGTGTTGGAGAACCAAAGGATTTTAAGCTTCTTGCCTCGTTTTGA
AGTCAAATTTCAATCTCCCATGTTCTATTTGGGTCCAACAATGCCTATCTCTCCCGGCAGTTGAGTCTGAAGCATTAGCTTTCAGGATATTTTGTGAATT
TTGAACTCTGTTATTTTCAAACTTTCATGTATGTTAGAAAAAGCCTTAGTGCTTCAGTTTGTATGTTGCTAAATAATTGGTCAGCAAACCGAAGTTCTCT
GGAGATATTATTGAGTTATTTTCTGTGATGTTCTATTTTAAGAACGGAAATTTCAGGTAGTTTTGTTATTGTTTTCCAGTTATATTCCAGCTCTATATAA
AAG