Detailed information on CNT0002474 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002474

Peptides detected in this lncRNA

>peptide 1 (59 aa)
FFLCCEFISATKPLTVCCHCYNTFFVIRGTTGWTTALSFILLCHFHYMMPTPDTNLWKG*

Sequence

>CNT0002474
TTTTCTTTTTATGCTGTGAATTCATTTCAGCAACCAAACCTTTGACAGTTTGCTGCCATTGCTACAATACGTTCTTTGTCATAAGGGGAACGACAGGCTG
GACAACGGCCCTCAGTTTCATCCTTCTGTGCCATTTCCATTATATGATGCCAACACCAGACACAAATCTGTGGAAAGGGTAGAGGAAGAGAGAAAATGAA
CAAACATGATTTATCAGGATGAGCAATATATATGTTCAAACTCAC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G05590.1 Uncharacterized protein protein coding CNT0002474 592 209 CDS Cis
GLYMA10G05590.2 Uncharacterized protein protein coding CNT0002474 592 209 CDS Cis
GLYMA13G19941.1 Uncharacterized protein protein coding CNT0002474 525 209 CDS Trans
GLYMA13G19941.2 Uncharacterized protein protein coding CNT0002474 525 209 CDS Trans
GLYMA13G19941.3 Uncharacterized protein protein coding CNT0002474 525 209 CDS Trans