Detailed information on CNT0002486 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002486

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SSSFIESSSVQRLSFGESCNILWILDRLS*

Sequence

>CNT0002486
AGCTCTTCATTCATAGAAAGTAGTTCTGTACAGCGGTTAAGTTTTGGCGAATCCTGCAATATATTATGGATCTTAGACAGATTATCATGAAACGGCAAAC
AAATATGATTGTAGTGTAATTCTGCTGTTTATAATATAGAGCATATTAACTTATGACTAATGGTATGTTAGCTCATAGTCTTCTGTATGAAGGCTGCAAC
ATTCCAGGTTTTTTTTGTAGTGTGAACGGCGTCTAGGCTTGTATGCCAATTTCAAATTTCTTAACTGCTGCCTCTCCGTAATAAGATCGTCAAGAAGGTT
GTTGCGTAATCAATTGTCAATACCAACCACCAACGGAGTGAGTTCAATTTTTTCTTCATTTTAGAACAAAACAGTCTTCACTAGTTTTTTATAATATCAT
GGTACATTTGCTCACCTAAATGAAAAATGATGACGTAACGTTCATGCAGGAAGGGTTTCTGCCAATGCATGTTTAAGCCTT

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G00360.1 Uncharacterized protein protein coding CNT0002486 824 303 CDS Cis
GLYMA10G00360.3 Uncharacterized protein protein coding CNT0002486 824 303 CDS Cis
GLYMA10G00360.4 Uncharacterized protein protein coding CNT0002486 824 303 CDS Cis
GLYMA10G00360.5 Uncharacterized protein protein coding CNT0002486 824 303 CDS Cis
GLYMA10G00510.1 Uncharacterized protein protein coding CNT0002486 768 303 CDS_UTR Trans
GLYMA10G00510.2 Uncharacterized protein protein coding CNT0002486 768 303 CDS_UTR Trans
GLYMA10G01780.1 Uncharacterized protein protein coding CNT0002486 622 303 CDS Trans
GLYMA10G01780.3 Uncharacterized protein protein coding CNT0002486 622 303 CDS Trans