Detailed information on CNT0002490 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q84LK0|MSH1_ARATH, E-value = 4e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002490

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLYIPRYKETFPGSSLSWALSLPPPQCSVETKIY*

>peptide 2 (32 aa)
MNDITITYSAKQYLTWKFWLELQHFPVKCSYL*

>peptide 3 (63 aa)
MDDALTSVHMPLPSFNLLNPQIINFQLTNKTNISKKDKFLFLTDNHNKLYQLMTHPQTEAIDI*

>peptide 4 (71 aa)
MRKENNQNKWQHQYKSLPTKIKIPQQDNQLSGYYLIADLQKDLKPHIQQEYIHLFPKLHKIPQPEQKFKNK*

Sequence

>CNT0002490
AATCAACATCACAGTAGGCCTGGAGAACAAGGGGCAGAGCTGAATTTGCTGGTTGAAACAACAGACCATGATTAACTGTGCCTTTAAGTCAACCAATATA
TTATTATCATAATTATAACAACCAACTTGAAAGCTCAAGAAAAATTAGAGAAAGTGAAAGAAGAATTCTGAAAATGACATTTTATTATTTCATAAAATTG
ATCTCATCCATACAAAACCCAACTATGTAAGGTAGGTAAGTTGACTCAATTACAGCTAAGCAATAACTGTAGAGAAGCTATATTCAAACACTGTAGTTCA
CAGTTATAGAAGTTGTAATACTTACTCCAATAACCGTATTGCTTATTTTCAATTTCAAGTTGGATTTCTGTTTGTTATGGATGATGCCTTAACCTCTGTC
CATATGCCCCTTCCTTCTTTTAATCTATTAAATCCACAAATCATCAACTTTCAACTCACAAATAAAACAAACATTAGCAAAAAAGACAAGTTTCTTTTCC
TCACTGATAACCACAACAAGCTCTATCAATTGATGACACACCCCCAAACAGAGGCCATTGACATATAGAAAATGTTGTACATACCCAGATATAAAGAGAC
GTTTCCTGGATCGAGCTTGAGTTGGGCCCTGAGCCTGCCTCCTCCACAATGCAGTGTTGAGACCAAAATTTATTAGCAGCATGTACTCATAGACTGGTAA
GATGGCAGGCACTATGAGAATTTACAAACAACATATGTGAGTAAATAGGGATTAGTCACTTTGGGTTTCATTTTGAAGAATGCTACAAACAGATGGACAA
CAAAAGAGAGCATAAGTTCAGTCATGGAGGGATAAAAATTTAAACAACATAAAAAAATGGTAGAGCATTGATTAATTGTTATACTCACCACTGAATAACC
GCTTTGTGTCCGATCATCTAAAGTTTGTCGAAGATTCTTTGACCAAAGAAAGGAAGAAAGTGATTATTATACATATAAGACGTTCATTCACAATTATCAA
TATAAAAATTAAATTTCATGAGAAAAGAAAATAACCAAAACAAATGGCAGCATCAATATAAAAGTTTGCCGACAAAAATAAAAATACCACAACAGGACAA
CCAGCTCTCGGGATACTATCTGATTGCAGACCTCCAAAAGGATTTAAAACCTCATATTCAACAAGAATACATACATTTATTCCCCAAGCTTCATAAAATT
CCCCAACCTGAGCAAAAATTTAAAAATAAATAAATAAATGATACCGAGAAAGAAAGAAAAATTTACTTCATGAAAGGTAGAAATAGAATGCTAGTGAACC
AGCTAACAAACAAACCAAATTTTATTGACAATGCGTAACCATGCTCTCTTCCAACTAAATTTACAAGAGCACCAGTGACAAAGCTCTCAATGAATGATAT
AACTATTACTTACTCTGCAAAGCAATACTTGACGTGGAAATTTTGGCTTGAATTGCAACATTTCCCAGTTAAGTGTTCCTACCTTTAGACTTCCATTTTT
CATGTTGGGATTCAGGCCAGGCAAATTAGAATAGTCAAGTCTTTCAGTTAGTTGGACAGTTGA

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA10G23902.1 Uncharacterized protein protein coding CNT0002490 3929 1491 CDS_UTR Trans
GLYMA10G23934.1 Uncharacterized protein protein coding CNT0002490 1606 634 CDS_UTR Trans
GLYMA10G26450.2 Uncharacterized protein protein coding CNT0002490 216 170 CDS Trans
GLYMA10G26450.2 Uncharacterized protein protein coding CNT0002490 166 143 CDS Trans
GLYMA10G26450.2 Uncharacterized protein protein coding CNT0002490 359 409 CDS Trans