Detailed information on CNT0002499 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8S9L6|CRK29_ARATH, E-value = 7e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002499

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)01.10.7500000.4020000000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.10.20.30.40.50.60.70.80.911.11.2

Peptides detected in this lncRNA

>peptide 1 (36 aa)
KVSHIQSLIDLLHFPHYHESYCFFGRIQFPTSLHQN*

>peptide 2 (60 aa)
MFNILRSHISTVNYNDQARLDIKKKCYFTIHVSSIDLNLFKSKLLAENMDYILFVKAILYL

>peptide 3 (58 aa)
KGITHTKLNRSSAFSSLPRILLFLWPHTISNIITPKLKTSDLTENFPCLIYSGAIYPL*

Sequence

>CNT0002499
AAAAGGTATCACACATACAAAGCTTAATAGATCTTCTGCATTTTCCTCATTACCACGAATCTTACTGTTTCTTTGGCCGCATACAATTTCCAACATCATT
ACACCAAAACTAAAAACGTCTGACTTGACTGAAAACTTCCCATGTTTAATATACTCAGGAGCCATATATCCACTGTAAATTACAATGATCAAGCACGATT
AGATATAAAAAAAAAATGTTACTTTACAATTCATGTTTCATCTATTGACCTTAATTTGTTCAAAAGCAAATTACTAGCTGAAAATATGGATTATATCTTA
TTTGTTAAAGCGATTTTATACTTAC

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G41140.2 Uncharacterized protein protein coding CNT0002499 91 97 CDS Trans
GLYMA10G39910.1 Uncharacterized protein protein coding CNT0002499 136 141 CDS Trans
GLYMA10G39920.1 Uncharacterized protein protein coding CNT0002499 846 325 CDS Cis
GLYMA10G39950.2 Uncharacterized protein protein coding CNT0002499 132 194 CDS Trans
GLYMA10G39950.3 Uncharacterized protein protein coding CNT0002499 132 194 UTR3 Trans
GLYMA13G35930.1 Serine/threonine-protein kinase protein coding CNT0002499 89 128 CDS Trans
GLYMA20G27580.1 Uncharacterized protein protein coding CNT0002499 326 200 CDS Trans
GLYMA20G27596.1 Uncharacterized protein protein coding CNT0002499 436 247 CDS Trans
GLYMA20G27596.2 Uncharacterized protein protein coding CNT0002499 436 247 CDS Trans
GLYMA20G27610.1 Uncharacterized protein protein coding CNT0002499 168 212 CDS Trans
GLYMA20G27610.2 Uncharacterized protein protein coding CNT0002499 168 212 CDS_UTR Trans