Detailed information on CNT0002502 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q03411|SUT_SPIOL, E-value = 6e-11

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002502

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3933.1562.28400.3911.4721.921.65700.2570.140.610.1320.6740leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01230.250.50.751.251.51.752.252.52.753.253.5

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MDSPTLSPATRVNTSLSFVLELLQRIARVIKDYLGILNEDSLRKTLCLCTNYMMKLLLLLVFLLL*

>peptide 2 (35 aa)
VLFSSGCCSCSMLSLIVKVKIFFTDFCDRRMRISL*

Sequence

>CNT0002502
GTTCTTTTTTCTTCTGGTTGTTGTTCTTGTTCGATGCTCTCTCTCATTGTAAAGGTGAAGATATTTTTCACTGATTTTTGCGACCGAAGGATGAGAATCT
CTCTTTAGAATTTTCCGTTTAGTTGGTTTTTTTTTTTTCGATTTCGAGGGAAACTAACGGAAAAGGGGCGGAACGGAAAATTAGCAACATTAAAGTTCAT
GACGTTTTGGGTTTGGACTGTGTAGTGTGAATTCTATGTGACTTTGCCGTTTGGAAAGCTTTATCCTCTATTGAACCTGAAAATGACGGTGAGGAACACC
GAGAAGCTGAGAAATGTTAGAACCTTGTTTTTGATTTTTTTTCCTCTTCGATTTTGATTTTTTTTCTATTGTAGTTTTTGTTGTATTGCTTTCTCTATTT
TTGAAATGAGATTGGAGATCTGACTTTGTGGTTTTTGAATTTTATTTTTTGGATTGTATTTTTCCAAGTTGCTACATTGAGCTTGCAAATGGAGGTTTGG
TTCCTGTTAGTGGAGCTCTTAAGGTTTGTTTCATAGTTCAATGATTCTGTTTTTCTTTTTAATTTGTAATGCTTTCTTAATGTGATTTTATTTTCCTAAA
AAATAAAATAAAAATAAACTATTGAAAATGTGATTTTAGATTGTGTTTTCTGCAATTATTTTTGTTTAAGTGTTGAGTTTGTAACAGACTTGATGGACTT
TTATCAAATCTAGTTAATACAACTGAGTTCTTCCTAATTCAAGTTTGGTTAATAAAAAGGCATGCGCAGTGCGGAGTGTACAAGTTAAGGGTCAAATACT
TAAAACTTTGCTTCTTTCCCTCCCCGTCGAAGAGGTCTTAAGGGATTTCAAGGGTCGCATAGCTACTTTGATTAAAGCCCTCATCACCGGTTCTTACTAC
TACTCCTTTCTTTCTTCTTATCCTTTTTTCCATTTCAAATTTTATTTTTTCTTTTTTTCTTTACTTTGACGTTAGAGATCTTGTTTTTTCATCTTGTTCG
TTCATCTCACTTCTAATTAAGGAACAAGCTTTCCGCAGTTGAACACCCTAGCTAGCTAGCTTCCACCAATTTGAATCACCAATGGCTCACTCTTTCTCTA
ACATCAAGGTTCTCTCTGCTTTTGTCGCCGATGGATTCTCCAACACTCTCACCTGCTACAAGGGTTAATACATCACTTTCTTTTGTCTTGGAGCTTTTAC
AAAGAATTGCTCGAGTTATTAAGGATTACCTTGGGATTCTCAATGAAGACTCATTACGGAAAACTTTGTGCTTGTGTACGAATTACATGATGAAGTTATT
ATTACTTTTAGTGTTCCTTTTGCTCTAGCATCAATATACTGCAACACTTGAGGAACAGGACAAGGTTTATCTTTGGGAGTTCTCAATCTTGCAATTGTGA
TACCACAGATGGTGGGGTTTGCATTAAGTGGTCCTTGGGAAGAGAATTCAAGAAAATGGTGACATTTAATTTAATGGGAGCATTTAATGGAGGGAATAGT
AGTAGACGATTTCTGGTACATTTAATCTTATAATTTCTTAATTTAAATCTATTTTTTTATTCTCTGATTTCTTTTTCATCTAACATTTCTTAAAGTGGTT
TATTTTAGGATTTGTAGATGTGTTTTTTTAATTTTGTTTTGTACTGATTGTATTTATTAGTATTTTGGAGGCATTTGATATACAATAAGTTATATATGTT
AAAACATAAAAAAAAAAGTGGACAAAAAGATATTTAGATATGTACGAATCTTATATAAAGAAAAATAATAATTTTTAATAATATCTATACAATTTATTTT
TTTGTTAAAAAAT