Detailed information on CNT0002507 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q06801|DPEP_SOLTU, E-value = 7e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002507

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0003.214000.138000.230.3760.410.1185.2412.445leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.56

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MYECPLASALFVFKMIICLYNCFILFTCKCTVSLYA*

>peptide 2 (47 aa)
MLRNEHQVTNILSISPKMNTKPPPVTAEKKMKKKLATSVEKPVLSFV*

Sequence

>CNT0002507
GTTCTTTTTTAAGTTGTATTAGGGCTCTCCTCCATGTTAAGAAATGAACACCAAGTCACCAATATTCTTTCAATATCGCCCAAAATGAACACCAAGCCTC
CGCCCGTGACCGCCGAGAAGAAGATGAAGAAGAAGTTGGCCACGTCGGTGGAGAAGCCAGTTCTTTCGTTCGTTTAGCATTGAAAGCAACCAGAGGAGTC
ACAAGATGTTGAAGGGTATGTCTCAAGGGTCGATTTCGTGAAGAACAGGTCACTCTCTCTAATCTCATTCGGGATGTGAATTGTGCGGCAAAACGCTCTT
GATCTCTCTTGAGGGCCTTGTCGAGGATGGGTTGTTGGAAAAACACGAGCTTCCTCAACCAATGCTGCAGATAGGCTGATTTCAAGTGAAGGGAAACTCA
AAACACAGCTTGAGAATTTTTGAAAGGATCCTGACATATCATGTGAGACACTCATTTAGTTGCAATTCTAATTAAATATGTATGAATGCCCACTGGCTTC
AGCGCTGTTTGTCTTTAAAATGATAATTTGTTTATACAATTGTTTTATATTATTTACATGTAAGTGTACAGTAAGCTTGTATGCATAATTTCTTTTTGCA
TTTTTTCTTCCCACAAATTTTGAGGATTTGATCCTTCTATTTTGTGCCATTTCCTCTTTTAATACACTATTCATTTATTGAAAATATATTAAACTGGGAA
AAATAAATAAAATCTAGAAGCTTGTTGTGATGGGAAATTTCAACACTTTCCATTTCCTTCTTCGATCTCATTCGGGTTAGTTATCTTCTTCACCCTTTTT
ACACAGTCAATTAATATTAAGCGTTGATGTTTGTATCTTAGTGAGTTTGTTGAATGAATCTTTTAGTTTTATATGCACAGTTGGTGTAGCAAGACTAGAT
CTTGATCGTACAAGTAATTGCCAAAGGGGGATTGTGAAAAAAATTGTTTGATTTAACCTATGCATGGAAATTACATGCAATTAATGTTAACTGGTATTGT
TGTTGGGGCTT