Detailed information on CNT0002508 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q39685|CMB1_DIACA, E-value = 2e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002508

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.0660.1060.1080.5770.1890.3160.8030.292.9053.9751.7972.5151.9070.7231.901leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTLIAAIQAIVYAFCFETDLSQWKLGSGIRLLIALYTVC*

>peptide 2 (89 aa)
MIYHETKLLWQGIVATGLVNIATSWCVPNRGPLLASIFYPLCPVLVAFASSLLLQEHLYLGRSTRSTTAVQWRPPVQLTTLRTIRNVPD*

>peptide 3 (31 aa)
RERKYEKMGIGSSYLFRLDDGYVVSIYCCSI*

>peptide 4 (33 aa)
VNVSMRRWELEAVTFLDLMMVMWLVYIVVVFKF*

>peptide 5 (49 aa)
MCVFSSLEHSDTVLFFGVTLAFTNSMLETLLIETNNVLRSKVIIISRSNA

>peptide 6 (71 aa)
MFQIKSKGRSFATFSEEPIRGRSCPNDLEQLENQLEAALRNIRSTKTQFMLDQLSDLHHRVDVCFFFLRTF*

>peptide 7 (39 aa)
MKFVSNGHQAFCLQYFSAIPLFIVSMIFLNPCPYLIGKC*

>peptide 8 (44 aa)
MDLCLLMHPMFDGIDFSFRGLCIIFAKKIVARRFGVDKQATLDE*

>peptide 9 (91 aa)
MNEICFQWPPSILPSIFLCYSLVYCFHDFPESLSLSYRKMLNNMICVIRTLIKEVKRKNILLECVKMRSRSHMMFNKNLSCICHGLTWDTF*

Sequence

>CNT0002508
CGTGAACGTAAGTATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGTTATGTGGTTAGTATATATTGTTGTAGTATTTAAATTT
TAGATTTTGGAAGTTTCACTTATCTTGCTTCTCTAAGGTAATTATAGAGTCATTGCTATTTGAAATGTAATGAAGTTTATGGTAAAGCCAACATTTCTAC
GAAGGGGCTAGTGGATGGTTAACTAAATAGATAGTTGTGGTTTTCTTAATATGATCATTGGGTGATTCATCAAGACATCATCGCCACTTGACTTTGAGAA
CTAAAATAGATAGTTGTGGTTTTCTTATTTGGCTCGCACAGACTCTTTTTGTAAGGCAATCTAGAGTTCCAGACACATGATAACTGTTTTATGACTGGTT
AGACCACTACATAAGCTTAAATAAGACCTAATAAACAAAAATCTTATCCAAATGAAGTGTTAGATTACATTTATTTTTGCATGTCTGCTAATTAATATTC
TCTAGATAAAGTGTATATTGATAAATTCGAATCCAATGACAACTATTGAAATGCTACATTTGCTTTCCTTGTTTGAGTATATGTAGGTTGATGCTACTAA
GAGAGGTAGGATTGCAAGATTACCACTCTTGTGAGGTACTTGTGTACTTTTAAATGCATTTTTTTTATCCACACATTTAAGGAAGTATTTTGGGCATATG
CATGTGTCACTTCTATTCTTCATTTCACGTTCTTCCTGATTTGAACTAGAGTTTTTGGCAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAA
AAGAAAATTTTCATATATGCGAAATGGCATCGCTAAGTTTGCTTGTGATATTTTATTTTCAGGTAGGTGACAATTTTATAATTATATTTTAACATTAAAT
AGTCACAAAAAATGTTCTCTCAAACCAAATAGGCTCTAATATTGGGTGCCTCCAGCCATCCTCTGTAATATGTTTTAACTGTTAGTACTCTTCTCTCTGA
AAACAATAGATGGATCTTTGTCTTCTGATGCATCCAATGTTTGATGGGATTGATTTTAGTTTTAGAGGCCTTTGTATAATATTTGCTAAAAAGATAGTGG
CTAGAAGGTTTGGGGTTGACAAACAAGCAACTCTTGATGAATGAAATTTGTTTCCAATGGCCACCAAGCATTTTGCCTTCAATATTTCTCTGCTATTCCC
TTGTTTATTGTTTCCATGATTTTCCTGAATCCTTGTCCCTATCTTATAGGAAAATGCTAAACAATATGATTTGTGTCATAAGGACACTAATTAAGGAAGT
AAAAAGAAAAAATATTTTATTAGAATGTGTCAAAATGCGTTCTCGCTCTCACATGATGTTCAATAAAAACTTATCTTGTATATGCCATGGTTTGACTTGG
GATACCTTTTGAAATTAACCCTATATATATGTATGCAATTGGCTAAGGTAAGTAAGTAATATCCAAGCCATAACTCAAGTACAGCGTTGATGACCTTAAT
AGCAGCAATACAAGCCATAGTCTATGCCTTCTGTTTTGAGACAGATTTGAGTCAATGGAAGTTGGGTTCAGGTATCAGGCTTCTAATAGCACTTTATACG
GTATGTTAATTAATTTCATAATTAGTGTTGGATGGTGAACTAATGTTATACCAATAATTAATGGATGATTTATCATGAGACTAAACTTTTGTGGCAGGGA
ATTGTGGCTACTGGATTAGTGAACATTGCCACTTCATGGTGTGTACCGAACAGAGGTCCATTGCTTGCATCTATTTTCTACCCCCTTTGCCCTGTGCTCG
TGGCTTTTGCTAGTTCCCTGTTATTACAAGAGCACCTATACTTAGGAAGAAGTACCAGAAGTACAACTGCAGTGCAGTGGAGACCACCTGTCCAATTAAC
GACACTCAGAACTATCAGGAATGTTCCAGATTAAAAGCAAGGGTAGAAGTTTTGCAACGTTCTCAGAGGAACCTATCCGGGGAAGATCTTGCCCAAATGA
CCTAGAGCAACTTGAGAATCAACTGGAGGCAGCACTGAGGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAGCTTTCTGATCTTCATCACCGG
GTAGATGTGTGTTTTTTCTTCCTTAGAACATTCTGATACCGTCCTATTCTTTGGTGTAACCTTGGCTTTTACAAATTCAATGCTGGAAACATTGCTTATT
GAAACCAATAATGTGTTAAGGAGTAAGGTAATAATTATTTCCAGATCAAATGCA