Detailed information on CNT0002515 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9XGW1|AGO10_ARATH, E-value = 4e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004418, E-value = 1e-06 (V. vinifera)
CNT0030450, E-value = 6e-21 (O. sativa)

Expression of CNT0002515

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)000000003.062.2542.5222.4494.03100.091leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MCIICWRNCITTISSQLSFKLSKTSIKVKVQSC*

>peptide 2 (75 aa)
MLMLAPYIYHSTKAKPLSSLTVKHDSLHIFFQVWQWLDTIITSCSCCFGTMTITVTCRAIVLHIWFHIETCSKRC*

>peptide 3 (57 aa)
MNTRKKLPLLAKMKEISTPASVKALWQNFLQRLTENIFYNAKFGIYIKPNNACRNSF*

>peptide 4 (34 aa)
MSMVSLFLSSSNIFGCYSHGTLTCIPICFSYSAG*

>peptide 5 (31 aa)
MLVEIHSKLWLKNCNHGSTTAKPTRLMYKVM*

Sequence

>CNT0002515
ATTTGTATAAATTGTTATTGATGCATATATTTATTGTATGAGTATGGTTTCTCTTTTTCTTTCTTCTAGCAATATTTTTGGTTGTTATTCACATGGTACA
CTAACTTGTATCCCAATATGCTTTAGCTATAGTGCAGGATAAACATGAATACTAGGAAAAAACTTCCCCTCCTTGCAAAGATGAAGGAAATTTCTACTCC
AGCATCTGTAAAGGCCTTATGGCAAAATTTTCTACAAAGATTGACAGAGAATATTTTTTACAATGCTAAATTTGGCATCTATATAAAACCTAATAATGCT
TGTAGAAATTCATTCTAAACTATGGCTCAAGAACTGTAATCATGGATCTACCACAGCAAAACCTACACGACTAATGTACAAAGTAATGTGAGGTGAACAT
TGCACTCCATGATTTGAAAACTTGCTTATCATGTTGATGCTTGCCCCATATATCTATCATTCTACCAAGGCCAAGCCACTAAGCAGTCTAACAGTAAAAC
ATGACTCTCTTCACATTTTCTTTCAAGTCTGGCAATGGCTTGACACTATAATCACCAGCTGCTCGTGTTGCTTTGGCACCATGACCATTACCGTCACCTG
CAGAGCCATTGTCTTGCATATCTGGTTCCATATAGAAACGTGCTCGAAACGCTGCTAAATGTGCATAATATGCTGGAGGAACTGCATAACAACAATTTCC
AGTCAATTAAGTTTTAAACTATCCAAGACAAGTATAAAGGTTAAAGTTCAATCATGTTAAAAATATCATAGCTGTTCAACTAGTGTTGAGGGTAAGGACA
TGGGTGAGTCATAACTGGGACCAAACAACCGAAAAACTACATATTAATTGAAGCACGGGCTTACCAACTGATACTGAGCGTGTACACCTGGCATATGTAT
AACAAAGGTTGTTTGTCAGAGACTGAATTCCATCAGGTGTGAAGTTGTTTTCATCCCACAGGACATGATAATGAGCTGGCCGACTAGTACCCTGAATGAT
AATAGAAACACAGTATGCATAGTTAAGAAAAACTCAGATGTTTAGATTTTTTCCAAGATACTAGTAAAGCAGATCTTGAATTTCACTCTGGGTTCATGTG
TAATCCTCCTATGTCAAAATTAAACAAGTCCTTAAGACATACTTGTGTTAGACATTAGAACCACACTGAAGTGGGGGAGGCCAGAATGCTAATTGCTAAT
AAAGATTGATATTTTGAACCTTAAAAAGTATTCTTAGAACAAGACCAGGCGAATGATTTTTCATAACTTCAAATAATAGACGTGAGAAAAACCAACAAAA
CACTTCTTATTGATAGTGCTCACTCTCCCTCTAATTTTGACAGTTTTGAACTATGACAATTTTCTTTCCCATAACCAATTCTCATTTGTAATTATAACAA
TAAATCCTGATATAGAAGGGAGGAAAGAAAACTATCTTCTACCTGGATGCCAGCATGGCTGCAGAGATAAAAATCAAATTCTGTTGGATGGCAGATTTTG
GTATCAACAACAGTCCCTGAAAGACAATTTAAAACCAGGCAATATATTCCCACTCCGATCTGTACTGCTTCTGTCCCTGTAGTTGTTTGCAAATAACCGG
GTATGATGTCTTTTTTGCACAACTATGAAAGTTACTGGAGGCTGGTAGTTTGGTTCTAAGGAAGCACATGCCTACACAGATATAACTTCTCAGAATTGAC
ATAATAAGAAAACAAGTGTATGATGAGAGAAAGTGATCCTGACCTTCCGAATTGCATCTAACTCATAAAGTAAAACTTGGTAAAATTGTCCTTCACTTAC
ACCATCC

lncRNA-RNA interactions

Number of interactions: 8

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G00510.1 Uncharacterized protein protein coding CNT0002515 320 287 CDS Trans
GLYMA02G00510.1 Uncharacterized protein protein coding CNT0002515 239 106 CDS Trans
GLYMA10G00527.1 Uncharacterized protein protein coding CNT0002515 332 283 CDS Trans
GLYMA10G00527.1 Uncharacterized protein protein coding CNT0002515 257 107 CDS Trans
GLYMA10G38770.1 Uncharacterized protein protein coding CNT0002515 762 274 CDS Cis
GLYMA10G38770.1 Uncharacterized protein protein coding CNT0002515 3942 1442 CDS_UTR Cis
GLYMA20G28970.1 Uncharacterized protein protein coding CNT0002515 651 281 CDS Trans
GLYMA20G28970.1 Uncharacterized protein protein coding CNT0002515 2831 1462 CDS_UTR Trans