Detailed information on CNT0002520 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93XY5|TET18_ARATH, E-value = 3e-28

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002520

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.698.7046.3863.5536.5165.9535.5554.7475.9456.4385.0085.4714.6093.6714.346leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.588.599.5

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MALDSFFSYFISKVNFRIINCTCTDSSSLKSHMTSGLC*

>peptide 2 (42 aa)
MTSDEKLFSPKLESLILIILEACLVERGPRCCHGTHKSCLNF*

>peptide 3 (81 aa)
MRLNLCHVSLGFVLKFLNFLQCFVGLSILLYSLWMFNEWDHSVPPDPPLPPAFHFYLKLNSINLPAPWCYYYFAHIFVNFC*

>peptide 4 (51 aa)
MKFAKASPLFLFAFSLRSTIRFDLVIRVLRVGRKIKHALSYFFFFFNLILM*

>peptide 5 (35 aa)
MAIGEYSHPFIHLKKVFVFVPLFYLQASVPSDCKE*

>peptide 6 (53 aa)
MSLVKCLDGYSFLFLANANLFFFPLDETGSSTISWDLEYWCYAFLSWVALQLK*

>peptide 7 (44 aa)
MVIHFYSLLMPTFFFSHLMRQVHLQFHGIWNIGVMHFFLGLHCS*

>peptide 8 (55 aa)
MGFGILVLCISFLGCIAAEMINGCCLCFVSHSNLECLFSYTTSEAQAFKLFCCAR*

>peptide 9 (46 aa)
MVAACVLYPTQTWNVYFHILLRKLKLLNCFVALVDIVENCRQIRLM*

>peptide 10 (34 aa)
MLRYPLQSDAWWGQNEVCKSIPTLSFCIQFAVDY*

Sequence

>CNT0002520
GCCTTTTTTCAAATAATTTTTTTTAAATGTATGCAGAGTCAGAGAGTACCTGACGGAAAAACCAAAAATGAGATAAAATAGAAATTGGGGAAGGAAGACA
AGTAAAGAGTGGTGGACGAGATCTGATTATCTAGTTTGCTCTGGCTTTTGGAAATCCGAATAATCAAAACCAAACACACGCAAGGAAGAAGAAGAAACCC
TAAAAAATTATTAAGAAATAAGATGCGGCTGAATTTGTGCCACGTTTCGCTTGGTTTCGTTCTGAAATTCCTGAATTTCCTTCAATGCTTCGTTGGCCTT
TCCATTCTGCTCTATTCCCTATGGATGTTCAACGAATGGGACCATAGTGTCCCTCCTGATCCTCCTCTTCCTCCCGCCTTCCATTTCTATCTCAAACTCA
ATTCCATCAACCTACCCGCTCCATGGTGCTACTACTATTTTGCTCACATTTTTGTTAATTTTTGTTAGAAATGTCATTTTGAAGATTCCAACTTGCAATC
TCTCACTATTCATTTCTCTTATAAGTTTTATTCTCAGTGGTAGTGTTCTGATTTGGGTGCTGTCAAGTGTATTAAATGCCATCAACTACTTTTTTCACGC
CTCAAAGGGAAATTAAATCTTTACGTCTCTTTATTTTATTTTACTGTTTTAGTGCATGTTGAGATATCCGTTGCAATCAGACGCTTGGTGGGGGCAAAAT
GAAGTTTGCAAAAGCATCCCCACTCTTTCTTTTTGCATTCAGTTTGCGGTCGACTATTAGATTTGATCTTGTAATTCGTGTACTGCGAGTCGGACGGAAA
ATCAAACATGCTCTTAGTTACTTTTTTTTCTTTTTTAATTTAATTTTGATGTGATTGTAATGTCTTTGGTGAAATGCTTAGATGGTTATTCATTTTTATT
CCTTGCTAATGCCAACCTTTTTTTTTTCCCACTTGATGAGACAGGTTCATCTACAATTTCATGGGATTTGGAATATTGGTGTTATGCATTTCTTTCTTGG
GTTGCATTGCAGCTGAAATGATTAATGGTTGCTGCTTGTGTTTTGTATCCCACTCAAACTTGGAATGTTTATTTTCATATACTACTTCGGAAGCTCAAGC
TTTTAAACTGTTTTGTTGCGCTCGTTGATATTGTGGAAAACTGTAGACAAATAAGGCTGATGTAGCGACGTTATGGTCATAGACACCCCAAAAATCTCTA
TGTTGTAGTTGAAATTGCGGTCAATGACCATTTTTTAAAACCTTTTTGGCTGAAAGTATAATGATCTTTTACTTTGAAGTAGTGTAAACTTGTGTGGAAT
GCTTTGAAATAGTAGCTTTTTACTTTACTTTTTATTTTAATTTTTTAAAAATTATCTTTGCTTTTCACTCCTTGACCTTTTAAAAAATGTTAGTACTCTA
TACTCGTGGTGGTGCTTCTTCTTCTGGAAGCTTCTCTGGTGGGATTCATTGCACTTGATAGTGATTGGGAAAAGGATATTCCATTTGATCCAACTGGTCA
ACTTGACGAGCTTCGAGCTTTCATTGAAGATAATATAGATACCTGCACATGGGTTGGCATTGCTGTGCTTGTGATTCAGGCATTATCTCTACTACTGGCA
TTAATTTTGCGAGCCACAGTTTCTTCTAGGAGAGCAGATTTTGATTATGAGGATGGATATGATGTTAGGGGTAGAAGTTGGGAGCCCCTACTGAATCCTC
AACCTGGCCAACCATCTGGGTCTAGCAAAGGTGATAATAGTGGAAATCACTCAGATTTTTGGAGTGTGCGGATGAGAGAGAAGTACGGATTGAACCATGG
TGATAAGAGCAGCTACCAACCATGAATTCCAGGCAATGAGTGCTACTAGCCATCAAGCAATTCAATGCTGTGTTGACATCTGAGTATATGTGTATATCTT
TGGTTTTAATGTTTTGTTTTACTTTCATTTGTTCTCAGGAAAATCTATGATGTAAGCAATATAGTGGTGGTAGTATATGTATTTTAAATTATACTAGTTA
TTGATTGAAGATTAAGAATCTTGTACTTAAAAAGCTTAGCAAAAGAGAAAAATGAAAAACAAAGGCTACAATACAAAGGACCTGATGTAAGCACCTTCCT
CAATGCTGTACTGATCGTGCAGTCTACATAATGGAACACGTGAAACACACGTCTTGCATGTGTTGCCATTCAATATTTTGCTTTTGTCAAGAACAAATAT
TTTGAATAATTTTTGAACAAGCTTAATTGGTGTGTTAAATATTGCACTGTGGAAAGTGAATTTCTTTGAGAACTTAACAAGTAAACGACTCTAATACAAC
TCATCTGGTGAAGTCGGAGAGGGGAAAATTTCCAATATTCTTGCTGTACTTAATTTGCTTGATCATGGCTCTTGATAGTTTCTTTTCTTATTTTATTTCA
AAAGTTAATTTTAGAATAATTAATTGTACTTGTACAGACTCGAGCAGTTTGAAGTCGCATATGACAAGTGGACTATGTTGATCATTGAATTTGGTGAGGT
CGTATGTTAGTATTTTGGCTGAATCGACCATGGCAAACGGTTGTTGAATATGTTCCTGTAGAACCACATTTTTTTTAAAGGAAGAATAAACAAAAGCACA
AGCTTCTTCTCTACACAGTACGTATCACAACACTCTTTCTCTTCCGTTTCTGTATAGGAAAATGACAAGTGATGAGAAATTGTTCTCTCCCAAACTGGAG
TCACTGATCTTAATAATTCTGGAAGCTTGTCTCGTGGAACGTGGTCCACGGTGCTGTCACGGGACTCATAAGTCGTGCCTCAATTTTTAAGTTGTAGATT
CCATACTTTGTCTTTTAGTTTAGTTAGAAATTTCACATCGAATGGCCATTGGGGAATATTCTCACCCTTTTATCCACTTGAAAAAGGTGTTTGTCTTTGT
CCCCTTATTCTACTTGCAGGCTTCAGTTCCTTCAGATTGCAAAGAGTAGTCCCCTCATGGCTCAGGCCATGTGTTTTAAGAATCTTTCCACGATTTACGT
AGAAAAATTGATCCACGAAAAGTTTAGAGGAAGAGGATGATTTCTCAATTCAAGACAAGAAAAAGTCTAAGAACTCAAATAATACTTGCTAAAAAAACTT
ACATTGATT