Detailed information on CNT0002521 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q07970|ATK1_ARATH, E-value = 5e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002521

Peptides detected in this lncRNA

>peptide 1 (37 aa)
ILSIGAPPFIKQKAHTKPKGGKVEIYLVAIKCTLYQL*

Sequence

>CNT0002521
CAATTTTATCCATTGGAGCTCCTCCATTCATCAAACAAAAGGCACATACTAAACCAAAAGGAGGCAAAGTAGAAATTTACCTTGTAGCCATCAAGTGCAC
TTTGTACCAGCTGTGATATCTCTATGAAAACGTCCTGCTGAGAAGCCTCATGATTAAACACCTTGTCAAATTTGAAATTGTACTTCTGCCCTGCTAATCA
TTAAAGGATGGGATTATGATACTTGACAAAGCATGCAAACTACACCAAACTCACAAGATACAATAGCAACAAAGAGGTTCAAAGAACTTTGTCAATATAC
CAACTAAAGTTGTCTTCATCGCTAGTTTCGAAAGGGTCAGACATGCATCGCTCCACCAACCCAATGAGAATGTGATTTGTAGACAACAACG

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G02190.2 Uncharacterized protein protein coding CNT0002521 208 143 CDS Trans
GLYMA06G02190.3 Uncharacterized protein protein coding CNT0002521 208 143 CDS Trans
GLYMA06G02190.4 Uncharacterized protein protein coding CNT0002521 208 143 UTR3 Trans
GLYMA06G02190.5 Uncharacterized protein protein coding CNT0002521 208 143 UTR3 Trans
GLYMA07G30580.1 Uncharacterized protein protein coding CNT0002521 618 262 CDS Trans
GLYMA07G30580.2 Uncharacterized protein protein coding CNT0002521 618 262 CDS Trans
GLYMA08G06690.1 Uncharacterized protein protein coding CNT0002521 545 262 CDS Trans
GLYMA13G32450.1 Uncharacterized protein protein coding CNT0002521 305 193 CDS Trans
GLYMA15G06880.1 Uncharacterized protein protein coding CNT0002521 285 167 CDS Trans