Detailed information on CNT0002524 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002524

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.2622.4591.4780.7890.17200.1690.6341.060.8470.4610.8390.1452.4732.8leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (105 aa)
MERIMKVIGEFASCIPKSPVSHSLQFAATQRTFLVSLKCTKAKECSISWSKIVLLSWPFSYTDTAVLTRETPRPKSACVPSEKYSETSERSTQVTQPSWY
ASQLQ*

>peptide 2 (36 aa)
MAVIREGLLLFPFVLGSREQLLCVNFYLGIIQMLCE*

Sequence

>CNT0002524
GAGAAATGTTATTTGGTTCATGTAAGATGATGTTATAAAGTAATGTTTGGTGTGAGAGTGAAGAGAAAATATTCTTTTCATTTCTTCCCTGCCTCCCTCA
TTTTTATTTTACAGTATTTGTTTTCTTAAAGTACATTAGTAATGGAAGAATGGAGAGGATAATGAAAGTGATTGGCGAATTTGCCTCTTGCATTCCCAAA
TCGCCAGTCTCTCACTCACTCCAATTTGCAGCGACTCAGAGGACATTTCTTGTCTCATTAAAGTGTACAAAAGCAAAAGAATGCAGCATCAGCTGGAGCA
AAATTGTTTTGCTTTCCTGGCCCTTCTCTTATACAGATACAGCTGTTTTAACACGAGAGACACCTAGACCCAAGTCCGCATGTGTCCCATCTGAAAAATA
TTCTGAAACTAGTGAACGATCGACCCAAGTCACTCAACCTAGCTGGTATGCATCACAATTACAATGATCACCTTCAGAGTTCAGACCAACATAGAAAAGA
CTAAATCATAAAGTGTATATATATGGCTGTTATAAGGGAAGGATTATTGCTGTTCCCCTTTGTGTTGGGGTCACGAGAGCAACTTCTATGTGTCAACTTT
TATTTGGGCATTATTCAAATGTTATGCGAGTGAATTAATTTTTATATATAGCACCTTTGGCATTAATATTATATGATATATATCACTCTTTTTTGCATCA
CATTCAGATAAATGCATCTTAATTTGGATCTATGTTGAAATACCAGAGTTACGTTCCTTTCATAGAGAATGCTATTAACGTTATTCTATAGAGAATTTTG
ATGTTTGGTTGCTTTCAAACTAAA