Detailed information on CNT0002543 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6YUL8|BC2_ORYSJ, E-value = 6e-19

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002543

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLSIIDFQIQDCTINKMDEVNSNKMAEASRSFSP*

>peptide 2 (30 aa)
MLPIHHQLHLQHNHLFLYLILINPYPPVKL*

>peptide 3 (82 aa)
MVFAFKRVKSSSGLLAFMSPRGRPPPFGDFRIARGNFIQRSVSITLFSTFGASGAFSELSDCEKGGVSGTTTFVPAKTNRSS*

>peptide 4 (46 aa)
MITVHLSRPLNQCTLKQLSTLSNKKPIFVCFVNTGIITSPFNLCLI*

>peptide 5 (63 aa)
MICWHTWMLGNHKNSHKCHPEFCICIYLSCMTKIYYKSSRYLMQFPQKHLQLLLLNYLLHLLN*

>peptide 6 (30 aa)
MIHQILGFRKGTDLVPTSLATENPFPLFCL*

Sequence

>CNT0002543
CGATAAGAATATGGTAACAGCATGCGTCTTAAATCATGGTCTTTGCTTTTAAGAGGGTAAAAAGCTCATCTGGCTTACTAGCATTCATGTCCCCCAGAGG
AAGGCCACCGCCATTTGGTGACTTTCGCATAGCTCGTGGTAATTTCATCCAACGATCTGTCTCAATTACACTTTTCTCTACTTTTGGAGCAAGCGGCGCA
TTTTCAGAATTATCTGACTGTGAGAAAGGTGGAGTATCAGGAACAACAACGTTTGTGCCTGCTAAAACAAACAGATCATCTTAGACCCAGCACAAGCACA
AGACTAAACACAACATGGGAAGACAGAGAGAGGTTTGATTAGATCATTTATTTAGGGACTTCCCTTTTCAAAGAATGACTGACACGCACCAGTGTATTTC
CAATATCTGAAAGAGGCTTTCTTGGCCCATGATCACTGTGCACCTCAGCAGGCCCCTCAACCAGTGCACCCTGAAGCAACTCAGCACCTTGAGCAACAAG
AAGCCGATCTTTGTCTGCTTCGTCAATACTGGAATCATTACCAGCCCCTTCAACTTGTGCCTCATTTGAGACTGATGATCTGTTGGCACACTTGGATGCT
AGGCAACCACAAGAACTCCCACAAGTGCCACCCAGAGTTCTGCATTTGCATTTATTTGTCTTGCATGACGAAGATTTACTACAAGAGCAGCAGATATCTG
ATGCAGTTTCCCCAGAAGCACCTCCAACTCCTTCTGTTGAATTATCTTTTACATCTTCTGAACTGATATTTGACTGATTGTTTTCCATGCTTACATGTCT
GCTTCTAGATTTTCTTTTCCTAACGTGAATTTTTTCTGATGCTACCCATTCATCATCAGTTGCATCTGCAACATAATCATCTGTTTCTGTATCTGATACT
GATAAATCCATATCCTCCAGTAAAATTGTAGATCGCCGATTTTCCTAAATGAAAACCAAATGATCATTAACTAGAGTACCAAAAAAAAGTAATTTGTCAT
GAGATAATAATCATTTGTAGGCATATTAAGAGATCTAGTGATATGCAAGAGAACTACCATCTTGCGCAAGTCATACTTATGTCCTCCATTTATGTCAGCA
TACACTGAATCACCCACAGATTCTGAATATCTCTTTGCACTCTGCCATAAGTTTATATAATATGGTTAAAAACAGAGAAAGAAAAGAAGTTACCAATTAA
TTGGATAATCAAAGTTGCAAAAACAAGGACCAATATTTCTTCAATTTTATAAACTGCAACTTAAATTTGGAAAGGAGAAAATTTTTAAGTTTCATTATAT
CAGTAAATTTTAAGTTATACACAAAATTTATTTCTCAAGATTAATCTGGATTAAGTGGAGCTCTCGATACTAACCAGCAATTTCAACTGATGAATAAGTT
CAGACTTCTGCATTTCCAACTGTCGAAGTGAACAGCTCAACCTTACTACTTTTTCCTTTAGATCTCTTATTTCCATGTCCTTCTCTCTGCAGATAAAGCT
ACTCTACCTGGAGGAAGATGCCAGATTGAACAAATGATTCATCAAATTCTTGGCTTCAGGAAGGGAACGGACTTGGTTCCAACGTCCCTTGCCACTGAAA
ACCCGTTCCCGCTCTTCTGCCTCTGACAAATGAGATGCCATTGACAGCAATGTTGTAGAAGAAGTAGCAATCATTTTTTCAAGGGCAAATATCCTTGAAT
TTCTTGCACCCGGAGACATTGATGCAAGGCCAGCACTAGATTAGCAATCCAAGCAAGCAGATGTTGTCAATTATAGATTTCCAAATACAAGATTGTACAA
TAAATAAAATGGATGAGGTAAACTCTAATAAAATGGCTGAGGCAAGCAGATCTTTTTCACCTTGAATTGTTAAGCTTCATCATATCTGCTTCTTCCTTTA
ATCTTGCAATCTCGTTGGCCATTTTAGCCCTCCTGTAAAGTATAGTTTGTGAGGAAAACTCTAATATAAGAATGACATCTACTTGTGTATATTATC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G37800.1 Uncharacterized protein protein coding CNT0002543 1416 509 CDS Cis
GLYMA02G37800.1 Uncharacterized protein protein coding CNT0002543 3214 1172 CDS Cis
GLYMA14G36030.1 Uncharacterized protein protein coding CNT0002543 332 145 CDS Trans
GLYMA14G36030.1 Uncharacterized protein protein coding CNT0002543 732 296 CDS Trans
GLYMA14G36030.1 Uncharacterized protein protein coding CNT0002543 2350 1127 CDS Trans