Detailed information on CNT0002561 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0023257, E-value = 6e-10 (A. trichopoda)

Expression of CNT0002561

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.5080.6050.618035.77823.268.131.65700.8860.1610.3510.45500leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.53537.540

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MYSLSCMCCGIVTAGHACRGLLCQVILYNK*

>peptide 2 (156 aa)
MGSLMAYATLTLVLAIIVTLSLPSQTSADKYDYSSPPPPEKPYKYKSPPPPPYKYPSPPPPPKKPYKYPSPPPPIYNTHLPPPPPYKYPSPPPPVYKSPP
PPYKYPSPPPPPYKYPSPPPPVYKYKSPPPPYKYPSPPPPPKKPYKYSSPPPPYHY*

Sequence

>CNT0002561
CCCCTTCTGAAGTTTGAGAGAAAATGGGGTCCCTAATGGCCTATGCTACTCTTACTCTCGTATTGGCAATAATAGTCACTCTAAGCTTGCCATCTCAAAC
CTCAGCTGACAAGTACGACTATTCATCTCCTCCACCACCAGAGAAGCCCTACAAGTATAAGTCACCACCACCACCACCCTACAAGTACCCTTCTCCTCCA
CCACCACCTAAGAAGCCCTACAAATACCCATCTCCTCCACCTCCAATTTACAATACCCATCTCCCCCCACCACCACCATATAAGTATCCATCTCCTCCAC
CCCCAGTTTACAAGTCACCTCCTCCACCGTATAAGTACCCTTCTCCTCCACCTCCACCATACAAGTATCCATCTCCACCACCCCCAGTTTACAAGTACAA
GTCTCCACCACCACCATACAAGTACCCTTCCCCTCCACCACCACCTAAGAAACCATACAAGTATTCATCTCCACCTCCCCCTTACCACTACTAAGTATAG
TGATTTACTATATATATATATCATCCCATGGATCTGAAGAATGTGTGCAAATAAAGAAGATTGATATGGAAGGAACAAGCAGTGAAGCACCATACATATA
TATCAGTTAATTTGGCTTGACTTTTTTTTTCTTTTTGTATTTTATAAAGTTTTAAGGCACTGTTCAGATCTGATCCATATGTACTCGTTGTCCTGCATGT
GTTGTGGTATTGTAACTGCTGGGCATGCATGCAGGGGTTTGTTATGCCAAGTTATATTATATAATAAATAATAAATAAATACCCTGAC