Detailed information on CNT0002562 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P40620|HMGL_VICFA, E-value = 7e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002562

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.10800.3534.2325.4333.8635.0394.25315.16318.27320.51918.0115.8127.3733.815leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0246810121416182022

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFHEKVPSLLWPKRRNKSIRKLFWLTIRNWRGRIQRNTSLTS*

>peptide 2 (49 aa)
MAKKKKQEYKKTILAYNKKLEGKNPEEYESDKLKFEVNDDEAIEELAKA*

>peptide 3 (69 aa)
MICLHHVIRSLGRKKLVNFFVAICIYIQVVVLEQKLLCSLNEEPPAPPLSFSDISIRSKIILQQNQYSH*

Sequence

>CNT0002562
GTATTAACCGCCTTTGTTTATATAACGGTGGCAATTTCGTAAATATTTAAAATATTACTAGAACGGTTCTCTTGAGACTGTCTTTGAATTGGTTATTATT
TTTATTTTTTTTTCTCTCTTTTATTTCGCAAGGCCATCTCTCCCACTCTCGCGTTCCTTCTTCGTCGCCTCGACTTCTTCGTTGCGACACTGAGAGAGTT
GAGGGAGCTGGCGGCGCTTTGACTTCTTCACAGTGTCACTCTGTCTCTCTTTTTCTTCTCACACTCACGCCTCACACAGTTCCTAAATCCCTAGCCAGTA
CAACCTCACTCACTTTCTCTCTTTGTCTCTCTTTCTCTCAGATTCCTACATTGTCTGCGCACTGGCACCAAACAACCATAAGATCTGCACCGTCGCTGAA
ATCGGCCTCAACGACGCATGCCGTCGGGAATCAGCAACTTTGTGGTTGAAGCGCAAGGGCACTGGTGCTGCTGGAAGGAAACAATCGAAGAAAGCTGCTA
AGGTTCCTAACAAGCGAAAGAGACCTCCAAGCGTTTTTTTCATTTTCATGTCCGAGTTCAGAGAGCAGTTCAAGAAGGAGCATCCTAATTTATTGATGAT
ATCCACATTTTTGTAACCTAGTTTGCATTAATTTAATGTTTCATGAAAAAGTCCCTTCGTTGCTATGGCCAAAAAGAAGAAACAAGAGTATAAGAAAACT
ATTTTGGCTTACAATAAGAAATTGGAGGGGAAGAATCCAGAGGAATACGAGTCTGACAAGTTAAAGTTTGAAGTCAATGATGATGAGGCGATTGAAGAGC
TTGCTAAGGCATGATTGAGGAACCCTTGAGAGTTGAAGTTTGAGCAGAAAAAAAGGGTGGGGTCTTGTTGATGCAAATGTTGTTGTTTAGATACGTGGCC
TTGTAAAGACATATCCTGGAACACGCAGCTTTGGTTGCTGTTTAAATGTAAAAGAACTTAAGAAGAAAGGAGACCCAAAGTAATTGGATGAGGCTTAGAG
ATGAACTCATTTAAAGCATCTACCTGCCAACCTAAGAGACTGGACCCAAGGCCTTAGCTTTAGGTTAGTTAGATGATATGTTTACATCATGTTATCCGTA
GCTTGGGCAGAAAAAAACTTGTTAATTTCTTTGTAGCTATCTGCATATATATACAAGTAGTAGTGCTCGAGCAAAAACTACTTTGTTCATTAAACGAAGA
ACCTCCAGCACCACCATTATCATTCAGCGACATTTCCATTCGGTCCAAAATAATACTGCAACAAAATCAATACTCACATTAAACAAAAAAAAATAGACAA
ACAAGTAACAGTTCTAGTCTAACTTACTATGCCTAACCAAAAAACATAAATTATTTGTCGACATCCAAATAACAGCTCCGCT