Detailed information on CNT0002568 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FXA2|PABP8_ARATH, E-value = 1e-09

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002568

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAENCLCMHELEKTRLQRSNPALVIHNFTNKIKRAQHLK*

Sequence

>CNT0002568
ACCATTCAAGATTGCACTAATTTAGTCTAGGTAGACAGAGTAGAAGAGATTACCTGGGAAGGAATGATAGCAGGAGGGCCTTGGGCATAAAATATTTGTT
GACCAATACCTGGACCACCTGGGGGATACATTGGCACACGAGGACCGACAGATGGTGGCATTCCAACAGGTCGCATTTGAGCAAACTGAGCCTGCATAAA
AAATTTAGTCCAACATAGAAATATCCTTACAGTCACTGAGATTCAATAGCCAAATACAATACAAAACTAATTATAATTTGCATTTATGACGCTGATTTGC
AAAGCACAGCAACAATTTGTAGTATGAAATACAATTGACAGAGAAAAACATGTAAACTATTATTCAAACAACCCATATTCAGCTCCGATTACAATCATCA
TATCTTAAGATAATGGAAAGAAATGGCAGAAAATTGCTTGTGCATGCATGAGCTTGAAAAGACAAGACTGCAAAGATCTAATCCTGCATTGGTAATACAT
AATTTCACCAATAAGATAAAAAGAGCTCAGCATTTAAAATAAGACATACCTGCAGTCTAGCTCTCCTATCTTCTTTCCGTTGGGCTAGAGTCACATACAG
AGGTTTGCTTACCACCATTTTGCC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G11580.1 Uncharacterized protein protein coding CNT0002568 1722 624 CDS Cis
GLYMA07G33860.2 Uncharacterized protein protein coding CNT0002568 581 318 CDS Trans
GLYMA07G33860.2 Uncharacterized protein protein coding CNT0002568 635 286 CDS Trans
GLYMA07G33860.3 Uncharacterized protein protein coding CNT0002568 581 318 CDS Trans
GLYMA07G33860.3 Uncharacterized protein protein coding CNT0002568 635 286 CDS Trans
GLYMA07G33860.4 Uncharacterized protein protein coding CNT0002568 581 318 CDS Trans
GLYMA07G33860.4 Uncharacterized protein protein coding CNT0002568 635 286 CDS Trans