Detailed information on CNT0002583 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|C7AU21|D27_ORYSJ, E-value = 2e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002583

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)18.67417.05724.170.51412.43220.11633.02921.991.382.761.4011.0931.3221.9330.651leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01020302.557.512.51517.522.52527.532.535

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MCVNMCKIPTQDFFTNEFGLPLTMTPNFEDMSCDMVYGQVPPTFEEDPVSKQACYANICSMAKPSSSVCHKLQA*

>peptide 2 (46 aa)
MAKSHLHLKKTLFQNKLVMRIYVLWQNQALVCVINYRHEKAFLSSV*

Sequence

>CNT0002583
TTTTTCATAACCACACAAAGGCACAAGCCAACGTAACCATATCTCATCCTCGTCCATTCTCTCTCTGATATGAGGTAAACACCACCAGAAAACCACCCTC
TGAGTTTCAAAAATCTTTTCTTCTAATCACCATTTTCAAATCAAGAAATTAAGCTAGCTTTCTTTCAACTCCCTTGGGAGCTTTAGGAGGCTTGGGTGGC
GCAACTCATCACCTCTTTTTCTCCTCTCTTCGCATAGTTCAACTTGAGTTCCGGAAATTATTTCCGCCAACAAAATGGGCTGCAGAGTTTAATGCTGCTT
TGACAGTGCCTTTCTTCGACTGGTTAGTTGGGCCATCTGAGGTTATGGAAGTAGAGATAAATGGAGTGAAGCAAAAAAGTGGCGTGCATATAAAGAAGTG
CAGGTAGATTTCATGTCTTTGAGATTGGTAATTGAACATTTGCGCAAAGTCATCTGTATTTCAATTCAAACATGTATATATTAGATTCATCTTTGGGGTC
TTGAACCCCTTTATATCAACCAAAAATAAAAATAAATTCATCTTTGTATGAATGACAGCAATCAATTGAGGCTGGGAGACCTGAAAAAGGACGATTAATA
GCTAGTATTTATTTTGAAATTTACTTCTTGCATTAATTAAGGCCGTTGTAACAATTTCACCATTTTTCCATTGTTTCCTTGATATTTATTCTTGTGAAGG
TACCTGGAGAATAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACTAATGAATTTGGACTTCCGTTAACAATGA
CTCCTAATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGTCCCACCTACATTTGAAGAAGACCCTGTTTCAAAACAAGCTTGTTATGCGAATAT
ATGTTCTATGGCAAAACCAAGCTCTAGTGTGTGTCATAAACTACAGGCATGAGAAGGCATTCCTTTCTAGTGTCTAGTAAGCTTCTATTTCGACCTGAGG
TGCTCTTACCGGTCTAGCTTCAGAAAATTTCATTTTTCACGCGTGTAATTATACCAGCCTTGTTAGGCTTTTACTTCTTTCATAGAGTCATTACATTCAC
AAATGAGAGGGCATTGTCTACAAATACTTCATGTAAATTTGTAATTATAGTGTCAAATATCAGTATTGCTAGATTGTACAATTTTTTTGCCAAAACTAAC
ACCCAAACTACGTGGCTATATTAGTTAATTAAACATCTATATTGCACTCTTTTTTCTACTAAAAT