Detailed information on CNT0002590 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002590

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.6346.1495.725.0025.56216.43915.5466.1331.122.3290.9751.811.01110.3549.26leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415161718

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFFYYDLIKGMVLVYDTICYRFQLQVMFYVCMSVYGHARRRFLV*

>peptide 2 (54 aa)
TTATVPLHHHHHHQQCLIQHGTTTTTPRASTEQQRLRFLTTTTTNTNNLLTEAP*

>peptide 3 (29 aa)
MYVCVWSCSSSFLGVDWGNCFTRVGLWKG*

>peptide 4 (122 aa)
NYRYGSTPPPPPPPTMPYPTWNNNNNTTRFYGTTTTSFSHHHHHQHQQPINGSPLAFWRIPNGSTNNNNPSFSHEHSSLPPLFATEEIANVRTSQVVGAS
GPTQNRYVYDSKRDRVSLDLHL*

>peptide 5 (89 aa)
MYVCLCMVMLVVVSWCRLGKLFHTCGIMERVRDSCVRMNNLSRHTCAEIHHIVQAGGVMREKESDISMRLAGTIAPPKLINFFQNLHVW*

>peptide 6 (50 aa)
ELPLRFHSTTTTTTNNALSNMEQQQQHHALLRNNNDFVFSPPPPPTPTTY*

Sequence

>CNT0002590
GAACTACCGCTACGGTTCCACTCCACCACCACCACCACCACCAACAATGCCTTATCCAACATGGAACAACAACAACAACACCACGCGCTTCTACGGAACA
ACAACGACTTCGTTTTCTCACCACCACCACCACCAACACCAACAACCTATTAACGGAAGCCCCTTAGCGTTTTGGAGAATCCCTAATGGCTCCACCAATA
ATAACAACCCTAGTTTCAGCCACGAGCATTCGTCGTTGCCGCCTTTGTTCGCGACCGAGGAAATAGCGAACGTGAGAACCTCGCAGGTTGTCGGAGCCTC
GGGGCCAACGCAAAATCGCTACGTGTATGACTCGAAACGCGACCGTGTGAGTTTGGATCTTCATCTGTAATAGTAGTAACAGCATGTTTCTTGTTTCCAA
TAGTTTTCGTTCGTACATAGTATTATCATGAGCCAGTAATAACATCAACCCTATTATGATTATGATGGCACTACGAGAGAATCGAGGGATTTGCAGGCAG
CGACTCTTTCTATAGAGCGACTTTGGGGACAAATTCCATAAAATATGAGAAATTTCTTCAAATTGTTTCCATTTTCTAATTCTTTCTTTCTTTCTTTTTA
TTTTACGTTAACAGTTCAATTTTAGAACATCTATATCCTGCATGTGGTTTAATTATCACAGTCTATTTAATTTTTAAATCAAGCTTGATTATCTGATCTC
ATTTTTTTTTTTATTTTCTAACCGTGAATGAATTCTTGAATTTAAAATCAGACACTATAATTAATAATTAACAAAACATGTTTTTTTATTATGATTTAAT
TAAGGGCATGGTATTAGTATATGATACTATATGTTATAGGTTTCAATTGCAAGTAATGTTCTATGTATGTATGTCTGTGTATGGTCATGCTCGTCGTCGT
TTCTTGGTGTAGACTGGGGAAACTGTTTCACACGTGTGGGATTATGGAAAGGGTAAGAGACAGTTGTGTGCGCATGAACAATTTGTCGAGACACACGTGT
GCCGAAATCCATCATATTGTCCAGGCAGGTGGGGTGATGAGAGAGAAAGAAAGTGATATTTCCATGCGATTAGCAGGCACCATTGCTCCCCCAAAATTAA
TTAATTTCTTTCAAAATTTACATGTGTGGTGAATATATCTTCCTTTTTCTTTTTTCTTTTTTTGTTTTTCACTCGCTTATTTACACCAGTGCAAATTGTA
GATAGAGAATTAATGAAATGACAGGCATATGAATGAATATGAAGAATTGAAGATTCATAGATATCTTTCTATATATGTGTGTTTATATGGATCTGTGGC