Detailed information on CNT0002592 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SZ13|VA0E2_ARATH, E-value = 8e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007118, E-value = 2e-13 (V. vinifera)
CNT0013687, E-value = 6e-11 (S. tuberosum)

Expression of CNT0002592

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.2192.983.85714.621.1811.3351.7411.4155.2157.6616.8575.9924.9768.1526.042leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)012345678910111213141516

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGFSVTTLVFAVIGIVASLSTRICFNRGPSANLYYALLASSFLSRTYEAI*

>peptide 2 (33 aa)
MYSCWIMTFQLDLPLPALPHVTIVVFNPRSFHK*

Sequence

>CNT0002592
AGCCTTTAAAAGTCTGACTTATTTTCATCCCTATTCCTATGGATCAAGAAACCCAAATAGTAATTAGGATAGGAGATTTTCGTAAATCCCATAAGATGGG
CCCATATGCGTGATTGCTCAGATTACGGCACTAAGGGGGTAATGTAAATGTTTCGTTCTCACTCTCACGTTCTTAATTTTTGTTTGTGTCTCTCTCGCAG
GAATTAGGATCCGATATGGGGTTCTCGGTAACAACGCTAGTTTTCGCAGTGATTGGAATTGTGGCGTCCCTTTCTACCAGAATTTGTTTCAACAGAGGAC
CTTCCGCCAATCTGTATTATGCTTTGCTTGCTTCTTCATTTCTTTCTAGGACTTATGAAGCAATTTAATAATTGCTGTTGCTAATCTTATAAAAAAAAAT
CATAATCTCACATAGCTCATAGATCTAATATGTCATTGAAGGAATTATGATATGCTTTTTTTTCTCAGAGGCTGTAAGAATGCCTGCTTTGCATAACTAA
GATATACTCAAACATCTATTTAATTAATATCTGATTCTGTTATGAATTCTCACAGTTTTACAATTTTAGTTAGTGGCAAAGTAGGTTTCTAAGATGATGT
AAGTTGTCCTCATTGAATAATGTCTCCTCTCACAAAATTACTCTTCTCTGTATGAACTAATATCTTATTACTACGTTGCAGATTTCACCTAACTTTGGTT
CTTACTGCAACAACATGCTGCTGGATGATGTGGGCGATTGTATATCTGGCACAGATGAAACCGCTCATAGTACCTATCTTGAGTGAGGGTGAATAACTTT
CTGTATAAACAGATGCAACTCTTCAGAATGTGAATCACTAGTTAGACGCTGGAGAGGAGTTGATTTCAGCTCTCATAAATCATTCAGTGTTTACTCTGGC
TGGATCTGTATGTATTCTTGTTGGATAATGACGTTTCAGTTGGATCTTCCATTGCCGGCATTACCCCATGTTACAATCGTTGTATTCAACCCTCGTTCGT
TCCATAAGTAGTGGTATTAAGTATGTATTTTGGTGAAATAAGTTGATACAAGAAAATTATATCTTGGTTTTACTATATTATATATATAAAAAAATTGATG
AGAGGATTTTTTCATGCAATCATGATCTTATATATGATCCTGTAGAGAAGAAGGAAGCTCTGGTCATTACCAATTATAAGAAACGTGATGAATTATGAGA