Detailed information on CNT0002594 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002594

Sequence

>CNT0002594
TGGTTCAAAGTCTACTTCTCATTAAATCAAATTTCATTACTTGTAACTCATGGGTGGGTGAATACCATTAAAAGGTTTTAAAAAAATTCACTTACACGTA
CTTAATCCAATCATTAATGTAACTTAGCTCACTTAAAACCTAAATAGTAAATCATCCTCTTAAATTGGTAACAATTTAGGGGTTGGAGGGAGGGGATCCA
AGTTAATAGTAATTTGCACCGGCTATTAGGATTTTTAGAAGTCCAAATTTATTGAAGACAACAATACAAAATAGATGTGACAATCACTTCTCGTAGGGCT
ATTTATACCATTATTGGGTGCGAAAAAGCATCATTCATAGCCCACAGCATTGCACTCAACTAGTACACACTAAAACTACACCCTAAACAAAAGTAATACG
CAAAGTTGAGGTAGCATCTAGGAGCAGTTTTGCGCTGGACAGTTAGATAGCAGACACTGAAGATTTAGAACCGATTTTGAAGGGAAAGATGATGCAAGTT
AACAGCTTGTCGTTATGATCCTTAAAATTCAGCTTCACATTATAGGTGCCCTGCATAAGTAGCACGATTAAATAATTAGGCAAAGAACCCATTGTGTTAA
ATGTTCAAGGTAAAACAGATACGTTGTAAATCAGAAATTCATTGAAGACCATAACAAGAACAAGCTGAGGAATGCAGGAATGACATATATCATAACATGC
GGTTATCAAGGAAAAACTGATCTAATAGTTGCTTGGAGTAATTAGTAGCACATTTAGCTACAGGAGTTATAGTTCAAATGGCCCTTGATTAACAAATAAC
AATCAAAATTTGTGCTTGAGTTGTAATGATATATAAGAGCTCCAACAGTTTATGTATAGACGAAACCAGTAAAAGGGGAGGAGGAAACATCAAATTCTTT
TGATCATGATAGCTTAATATCGTTGTCACTTCTACAACTTGTTACTAGGACTCTTCAAAAAGTATTAGAGAACCAAATTAAACCACCAACTAAATTGAAT
TGAGAGTTAGAAAACCAAACAATTTTCATCAGTGAACGGAACAAAGAAATAGTATGGTTCAATTTGGGAGAGAACCATTTTCCAGTTTGGTTCAGAGAGA
ACCATGTTCCAGTTTAGTTTGGTTTAGTTTCCTGTGCTGAACCAAACCATGATTGATCCAAAAGTATTATGAACCAAACAGATCCATGAACCATTAAGGG
TTCAAAAACCGAAACATTTTTACTGGTGTACTGAACCAAAGAAATAGTTCATGTGAAACGTTTTCTAGTTCAGTTCGGACTAACCGTTTTCTGGTTCCCT
TCATTTTTCTGTATTAAACCGTGAACAATACTACTTCTTAGTTATTACCATTATTCACATCACAATATGTTTTGCTTTTTAACAGCTAAAAACCAGAAAG
GGGAATTAGTAGTGCAGGTTTGCTTTGCAAATGCCCAATAATGCCATAATGAGAAAATGAGTTGATGCCTTGCCAAGTAAGTTCATAGATTTGAAGAGGT
CCCAATCCCATACAGATGTCAAGGGAACACAGACTTTATTTTGTTGATAGGATAATATTCTCAGATTAGCCACAGAACTGTGAATATATTTGGTAAAGTG
GGAAGTGGAAACTAACTGGTGGGGTAACCGGAGGCAATAATTCGGTGTGAACGAGCACAAAGTTGCCTGCAGGTACTGGGCATGGTGCTTCCTCACAGAG
ATCATGGAGAAATGTAGCAGGTTGTGCTTCTATTCCAGCATAAGAAATTTCATATAACAAGTCCCCGCTTTGAATTGGTTCAGCTGCATCAATAATAGGT
ACAATCTCCACTCATTAGTAATGTAAGTTAATAGGTCAAAATCTAAACATAAAAGCTTTATACTAACAAAAAGAAAAGCTTATTATGTTTGTACTTTGTA
CTTATACATGACTAGTTTTTAAAAAACAAGTTCTTTTCGGAATTTT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G43790.1 Uncharacterized protein protein coding CNT0002594 1584 580 CDS Cis
GLYMA02G43790.1 Uncharacterized protein protein coding CNT0002594 1732 633 CDS_UTR Cis
GLYMA02G43790.2 Uncharacterized protein protein coding CNT0002594 1362 499 CDS_UTR Cis