Detailed information on CNT0002595 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002595

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MDYEQGTISRIRMNTNRNGNAMLETHNMGDQTGLHVRDKMNS*

>peptide 2 (54 aa)
PVRKIPINRGQMPPLIGLKELVQTSKHLHSLKNILFNSFPFYYSSKTGPYFTRI*

>peptide 3 (38 aa)
MMDLFKRKPCLLCILMENSCSWHCKVIVQQQANIKISR*

>peptide 4 (34 aa)
MKGSSSVLRIFYASMCYPLFPSLLDNILCLTIQE*

>peptide 5 (32 aa)
MQNLHLTMMDNLISLFSVLIVCINCLSVFHSF*

>peptide 6 (37 aa)
MFKELELIHKRRIYGIKLQIDRTNIKLKNKEKEGKVT*

>peptide 7 (59 aa)
MFGPTQTASQPPKSTLKFLCSYGGKILPRYPDGKLRYLGGHTRVLAVDRSIPFSGLTED*

>peptide 8 (40 aa)
MAMQLSSPTILCYCLTIYLLLMLHFFGNFLFILIPFPIRN*

Sequence

>CNT0002595
GCCAGTGAGAAAAATCCCTATAAATAGGGGACAAATGCCACCACTCATTGGCTTGAAGGAGCTAGTCCAAACTTCAAAGCACCTTCACTCTCTTAAAAAC
ATTCTCTTCAACTCTTTTCCATTTTATTATTCTTCCAAAACTGGACCTTACTTTACCCGAATCTAAATCCCAACCCGAACCAACCATGTTCGGACCAACC
CAAACCGCTTCCCAACCTCCGAAATCCACTCTCAAATTCCTCTGCAGCTACGGCGGCAAAATTCTCCCCCGCTACCCCGACGGCAAGCTCCGTTACCTCG
GCGGCCATACCCGCGTCCTCGCCGTCGATCGCTCCATTCCATTCTCCGGTTTAACTGAGGACTGAAAGAAAATCTTACTCACACAAGATGGCATTTGGCG
CGTTTCCATTGTAAGTTTCTTTTAGCTGTTTCCGGATTCGAACCCATGACCAACAAGTCACCAAGGTATAACTTTACCGCTGCACCAAGGCTCGTCCTCT
TTCTTTTACCCTACGATACATAAATTTTGTTGTGCTCTTTAATGGCAATGCAGTTGTCATCACCCACTATTCTATGCTATTGCTTGACAATTTATCTTTT
GTTGATGCTCCATTTTTTTGGGAATTTTTTATTTATTCTTATTCCATTTCCAATTAGGAACTAGAGTTTAATGGGGAATTAAATTTTTTGAATTGTCAAC
CTAACCAGTATAGTTTTTCAGATAATAAACTTACCATATGTTACAATTTATGATTGATTTTCTTCTGTCAGTGCAAAACCCTTTTTTTAGTGAGTATCTT
GTATAGTTTTAAAAAATGCATTGTGGAAATTAGAGTTATTTGCTGTGTTCTCGGACCGATGCAAAACCTACATTTGACTATGATGGATAATCTTATTTCT
TTGTTTAGTGTCCTTATTGTCTGCATAAATTGTCTCTCCGTGTTTCATTCCTTTTGATTAACTAATGATGATGTTCAGATTCAGCTCTAGGGTTCTGACC
AGATTCAAGTGAAGTGCTGCTTTTTTTTTTTTTAAATGAAGTGAAGTACTGCTACGAACTATGGACTATGAACAAGGGACAATATCTCGGATTCGTATGA
ACACCAATAGGAATGGCAACGCAATGTTGGAAACACATAACATGGGTGACCAGACCGGACTCCATGTAAGGGATAAAATGAACTCATAATGAAAAATGAA
AATTAAAACTATCGCATGACAGCTGGCACATGAATGTTCAAAGAACTTGAACTCATACATAAGAGGAGAATATATGGTATAAAACTGCAAATTGATAGAA
CCAACATAAAATTGAAAAATAAAGAAAAAGAAGGAAAAGTAACATAAAATACGAGGAAAAAAAAAGAAACTAAAAACAGGGTCATCGTTTCAGCATGGAA
GTGTTAAAATAGAAGATTTAGTATTATTGGAAATAAAAGGACCTCCACTCATGTAACACTCAAATGGAAGATTCCTTTCGCTGTCTTAATTTGGAAGAGA
TACGAGAGATATTTCACCTGCCCATTTATCCGGAATAAATCAATTAATTTATTAATTATTAATTAAAACAATGACAAGCCAAGCATGAAAGGGAGTTCAT
CGGTGTTAAGGATATTCTACGCCTCCATGTGCTATCCTTTATTCCCATCTCTTTTAGATAATATTTTGTGCTTAACCATACAGGAGTAATAAAGTGAGAA
GGTTAAGGCAGGGTACATGTGGGATTAGTCTTTCATCGAGAGAGGTCTTCCTTTTTGTCAAGAATCATTAAAGAAAATGTGAGACTTACATAAAATAATA
ATTTTAATAAACCTTAACCAATAAAAAGATCCGTTCGAAATAATATGAATAATTCAAACAAATTTTGAATAAAAGAATGTGAACGTTAACCCGTTAAAAG
AGAAAAAAACTTGACTTTGGGAAACCCACAAAGTGATGGATGATGGATCTCTTCAAACGTAAGCCTTGTCTGCTCTGCATTTTGATGGAGAATTCGTGTT
CGTGGCATTGTAAGGTTATTGTTCAACAACAAGCAAACATCAAGATAAGTCGGTGAAAGAAACGCAGAGGAAAACAAAAGGAACGGCCAAGGGGGATGGT
ATGGATGCCAAAACCGAAATAAGTAAACTATGATTTTTTTTAATCTGTAATTTTATTCATAATTGTAAAAAGAATTTAAGCGAATTGGATTAATAATGAA
TATTTGAGTAATTGGTCAAATTATAACTAGGTTTAAAATTTCATTATCTCTAATATACTAAAATGTTGTAAAAAGAAGCCTGAATACGTGAGCTAAGCCT
GTAATGGGATGGACTAACTTAATAATCTAAATGTGTATCTATATTTTTGTTTATAATTTCTAAACTTTGAACAAAAAGTTCATACTAGGCTGTTAAGGAT
AACAAATAAAAATGTTAATGGGTTGAATATTATGATAAATTTCAAGAGATATATTCTCGTAAAAATGCGTAGCCATTTTATTATTCTTTAGATATGAAAG
GTTCCTCTTTCTTTTAATCGCTAAGAAATATCTTGCGAGTTGCTAGT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G09411.1 Uncharacterized protein protein coding CNT0002595 185 74 CDS Trans
GLYMA20G03090.3 Uncharacterized protein protein coding CNT0002595 197 75 CDS_UTR Trans