Detailed information on CNT0002609 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002609

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKMTRKLKMLTLGFSSGFGMLLPSSKLGFRMVQLLTIDWKNIKYFTRKRGKQNM*

>peptide 2 (42 aa)
IHRKFLLLNKTADKHKYPSQPLKNKLQSQAQGAQTMHIPVNC*

Sequence

>CNT0002609
ATCCACAGAAAATTTCTTCTTCTCAACAAAACAGCAGATAAGCACAAGTATCCCAGTCAACCACTGAAGAATAAGCTGCAATCCCAAGCCCAAGGTGCAC
AAACCATGCACATACCTGTCAATTGTTAATAAATGAAAATGACTAGGAAATTAAAAATGCTTACTCTGGGGTTTTCTTCAGGTTTTGGCATGTTGCTTCC
ATCAAGTAAGTTGGGTTTTAGGATGGTTCAACTTTTGACAATTGATTGGAAGAATATCAAATATTTTACAAGGAAACGAGGGAAACAAAATATGTAAGCA
TGTTCCTTGGTTTCCTGAGCATATAAAAATTATATAGACTCTACTAAACCAAGCCATAAGTTCTCTAGAAGTCTAATAGACTAATACCACCGCTTACTAA
GCTCTCATTTCCTAATCCAGTTCCAGTAGGATGGGGAACTAAAGTAGCCTCACAAAGGAATGAAGGAATAGTATTTTGAGAACAGACAACAGAGGATTTC
AGAAATACGGTGATCAGGAGAAGAACCTGTTTGAATTGTAGAGTATGGTTTTGCAGATTTTAGATAATGATAATGCAATGTTTGGACATGTGAATTATAA
ACAAAG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G06450.1 Uncharacterized protein protein coding CNT0002609 678 300 CDS Trans
GLYMA02G12460.1 Uncharacterized protein protein coding CNT0002609 888 325 CDS Cis
GLYMA02G12460.2 Uncharacterized protein protein coding CNT0002609 888 325 CDS Cis