Detailed information on CNT0002614 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M5W4|H1_EUPES, E-value = 2e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002614

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)11.0737.55311.65279.9111.0569.5055.3635.02920.78925.44322.9624.2225.51468.858120.154leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0102030405060708090100110120130

Peptides detected in this lncRNA

>peptide 1 (125 aa)
AGLGLGLAAGLVPLGLAAAGLGLEAAAAAAFGLGAGLGLAGTLALGLAAALGLAGAFDLVALVSLALAAGLGLGLGLGLGWGLAGAGFFFFAGEEEEDAE
GRVGGSLKEPLTLTSFPAATSFFKW*

>peptide 2 (54 aa)
MSGRVAWSGNLFRFGFLGSGAGSTATVGSSEAMGMRELGFETGKENWDLLVRGR*

>peptide 3 (34 aa)
MNFAIACWLEPVFSFSEVIASLIICKRKSKLDPN*

>peptide 4 (77 aa)
MVEKKLPEVRWKLLVLLLDELRNRVLARTGFLLQRGNCVFNHLQKKIKIRSKLIRSQTNSERKMEKIKNCGSDRTSS*

>peptide 5 (56 aa)
GLGLGLGSWLSPFGLGGSRLGLGSSSSSSLWFRGGLGLGWNFGFRLSSCLGLSWCL*

Sequence

>CNT0002614
GCGGGCTTGGGCTTGGGCTTGGCAGCTGGCTTAGTCCCTTTGGGCTTGGCGGCAGCAGGCTTGGGCTTGGAAGCAGCAGCAGCAGCAGCCTTTGGTTTAG
GGGCGGGCTTGGGCTTGGCTGGAACTTTGGCTTTAGGCTTAGCAGCTGCCTTGGGCTTAGCTGGTGCCTTTGACTTAGTTGCCTTAGTGTCCTTGGCTTT
AGCAGCGGGCTTGGGCTTAGGCTTAGGCTTGGGCTTGGGTTGGGGCTTAGCAGGTGCGGGCTTCTTCTTCTTCGCCGGCGAAGAAGAAGAAGATGCAGAA
GGTCGGGTAGGTGGGAGCTTGAAGGAGCCTTTGACTTTGACGAGTTTTCCAGCGGCTACAAGTTTCTTCAAATGGTAGAGAAGAAGCTTCCTGAAGTTCG
GTGGAAGCTGCTTGTGCTTCTCCTCGATGAACTTCGCAATCGCGTGTTGGCTCGAACCGGTTTTCTCCTTCAGCGAGGTAATTGCGTCTTTAATCATCTG
CAAAAGAAAATCAAAATTAGATCCAAATTAATCAGATCACAAACAAATTCTGAGAGGAAAATGGAGAAAATTAAGAATTGTGGTTCGGATCGAACCTCCT
CGTAGGAAGGATGAGTGGGAGGGTTGCGTGGTCTGGAAACCTTTTTAGGTTTGGGTTCCTTGGTTCGGGAGCGGGTTCCACCGCGACAGTGGGCTCTTCT
GAGGCCATGGGAATGAGGGAATTAGGGTTTGAAACTGGGAAGGAGAATTGGGATCTGCTCGTAAGAGGACGTTGAAGAAGAAACTGGGGATTGAAATGGC
AATTG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G15910.2 Uncharacterized protein protein coding CNT0002614 2010 665 CDS Cis