Detailed information on CNT0002621 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q93Z17|HLP_ARATH, E-value = 9e-20

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002621

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.1212.0041.5356.371.7860.9971.7560.1833.2613.9123.5462.7111.844.5672.769leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.57

Peptides detected in this lncRNA

>peptide 1 (56 aa)
PFLLLPLCFFAFIIPFPWLNNRCFVRWVQEKRSKFQPWLQPLLQDVLFWAVLCLVD*

>peptide 2 (60 aa)
MEVRSSLMTSKANPLGLEFLGQCLMNSGRTTMSRFLLWPAILLNSACIFLIWNLCVCKMY*

>peptide 3 (59 aa)
FHSFFFLCVSLRSLYHSHGSIIVALFVGFKKNAQNFNHGCNPYFKMFSSGPFFAWWIKE*

>peptide 4 (29 aa)
MRTVLKVVDNSGEKKVTCIQALKGKKVTQ*

>peptide 5 (56 aa)
MAATLTSRCSLLGRSLLGGLRNNNLSGSLTSHEIKSSNFLSQQHHVHTDEDGSEGG*

Sequence

>CNT0002621
TTCCATTCCTTCTTCTTCCTTTGTGTTTCTTTGCGTTCATTATACCATTCCCATGGCTCAATAATCGTTGCTTTGTTCGTTGGGTTCAAGAAAAACGCTC
AAAATTTCAACCATGGCTGCAACCCTTACTTCAAGATGTTCTCTTCTGGGCCGTTCTTTGCTTGGTGGATTAAGGAATAATAACTTGTCTGGTTCATTAA
CATCGCATGAGATAAAATCCAGCAATTTCTTATCCCAGCAACATCACGTTCATACAGATGAGGACGGTTCTGAAGGTGGTTGATAACTCGGGGGAGAAAA
AAGTAACGTGCATTCAAGCATTGAAAGGGAAGAAGGTGACACAATAATAGCATCAGTGAAGGAGGCACATGCAAAGGGGGAGGGTGTGATGGAAGTGAGG
TCAAGTTTGATGACAAGCAAGGCCAACCCATTGGGACTAGAGTTTTTGGGCCAGTGCCTCATGAACTCAGGCAGAACAACCATGTCAAGATTCTTACTTT
GGCCGGCCATATTGCTTAATTCAGCTTGCATTTTCTTAATTTGGAATTTGTGTGTGTGTAAAATGTACTAATTTGGTTTTAATCAAGCTCTATTAGGGAA
AAGAGGAAAACGAGAGTGTACAATTGATGCCCTCAATTTAGGGAAAAGAGAAAAACACATGTATTGGAACTAATTTTTACCATTAAAAATAACAAGTAGC
AGGCAAAAGGGATG