Detailed information on CNT0002625 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002625

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3820.971.1334.5330.8241.0351.7811.0630.8463.3831.7661.6081.251.4222.108leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.755

Peptides detected in this lncRNA

>peptide 1 (29 aa)
KHFLFLSSPFPSSCLVLIAAMTLTSAPPF*

>peptide 2 (59 aa)
MPPKPATTVPTSLPPPLLPPPPPGSIHLSWLPNENALHLIIRLKPMTWYDSPKQKLLKQ*

>peptide 3 (45 aa)
MTRFRPHGHVCDGGGLNCGKEDPMMTTCNMQKKEREEEKEKRKRK*

>peptide 4 (44 aa)
QTFSFPLFSVSFFLFGPNSRNDTHISTTILNQNPLLCVDLNQKQ*

>peptide 5 (32 aa)
MVMKKASTKGHIMMILGLLALFIFLFILVFFT*

>peptide 6 (54 aa)
MLILFPWEISHSKIVKALMFQEKIIDELGNEMDNTSNRLARFCPKISDNGHEEG*

Sequence

>CNT0002625
CAAACATTTTCTTTTCCTCTCTTCTCCGTTTCCTTCTTCTTGTTTGGTCCTAATAGCCGCAATGACACTCACATCAGCACCACCATTCTAAATCAAAATC
CCCTTTTGTGTGTTGACCTAAATCAGAAACAATGACACGGTTCCGGCCCCATGGTCATGTGTGTGATGGTGGTGGTTTGAATTGTGGGAAAGAAGACCCG
ATGATGACCACCTGCAACATGCAAAAGAAGGAAAGGGAAGAAGAAAAGGAGAAGAGAAAAAGAAAATAGCACTGCCACCGGAAATCGTCTTTGCCAGAAA
AGGAACCTTGTTCAGATGCAGAAATTCCATCCATGATAAAATGATACACTATGCCTCCAAAGCCTGCCACTACTGTGCCTACATCATTACCACCACCTCT
TTTGCCTCCTCCACCTCCTGGTAGTATACATTTATCATGGTTGCCAAATGAGAATGCATTACATTTGATTATAAGGTTAAAACCTATGACTTGGTATGAT
TCTCCTAAACAAAAGCTTCTTAAACAGTAACATAATTTCTAAAATGCAGGTGTAGCTTCCTTTGAGTGTCTTCAATAGTAGTTGTGTTCTCATGCTGATT
TTGTTTCCGTGGGAAATTTCTCATTCTAAAATTGTCAAAGCCTTGATGTTTCAGGAAAAGATTATTGATGAACTGGGTAATGAGATGGACAATACATCTA
ATCGTCTAGCTAGATTTTGTCCAAAAATAAGTGACAATGGTCATGAAGAAGGCTAGTACAAAGGGCCATATCATGATGATATTGGGTTTGCTGGCGCTAT
TCATTTTCCTCTTTATCTTAGTTTTTTTCACCTAGTTATTGAGACAAACTTTGTCAACGC