Detailed information on CNT0002642 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SDY5|RCE1_ARATH, E-value = 5e-29

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002642

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MQFPNGKDDLMNFKVSIRPDKGYYKGGTFLFTFQVSPIYPHEAPKVKVQDK

>peptide 2 (37 aa)
MLDPYPQQNSCLPQTMQETLFEPVHVFQQMTQFLHSH*

>peptide 3 (31 aa)
QLITCLLESIILFTTNCLQAIVACATPLHSK*

Sequence

>CNT0002642
CCAACTCATAACATGCCTCCTGGAAAGTATTATACTTTTCACCACTAACTGTCTTCAGGCAATCGTAGCCTGTGCAACCCCTCTGCATAGTAAGTAAAAT
CCTCATGTAATAAAGTTCCCCAATGCCAGGGGGAATGTACTGAAGCGTGCCAATACTTTGTCCTTTCTTCCTTGGTTGCCACATTTTTTCTTTTTGGCAA
TAGACAAATTTAGTGGGAAATTCTGAATATGTTAGATCCCTACCCACAACAAAATTCTTGTTTGCCTCAAACCATGCAAGAAACATTGTTTGAACCTGTT
CATGTCTTTCAACAAATGACTCAATTTCTTCATAGTCATTGAAATAAACAGCTTGCTGATTTGGAAGGTGAAAAATTAATCTCTGCACTGGCAGCCACTT
GTAATGAAGGTCAAACTCGAAAATTCTCCAAGCTCCTTCACATGCTGAAACATATCTACAGTCATAATATTCTTTGATCTCATCAACAGATATAAGTGAG
TTGAATCTGCCAAAATCTTGTAGCATGCAGTTTCCCAATGGCAAAGATGACCTGATGAACTTTAAAGTTTCAATCCGACCTGATAAAGGATATTACAAAG
GTGGCACATTTTTGTTTACCTTCCAAGTGTCCCCCATCTATCCACATGAGGCGCCGAAGGTTAAAGTGCAAGACAAA

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G36241.1 Uncharacterized protein protein coding CNT0002642 178 386 CDS Trans
GLYMA10G15886.1 Uncharacterized protein protein coding CNT0002642 143 234 CDS Trans
GLYMA12G17481.1 Uncharacterized protein protein coding CNT0002642 181 481 CDS Trans
GLYMA16G23131.1 Uncharacterized protein protein coding CNT0002642 239 481 CDS Trans