Detailed information on CNT0002650 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q6PBL0|TIM16_DANRE, E-value = 1e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002650

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.8475.8544.0855.4476.1084.2625.8385.1613.3112.7873.3353.9742.2885.3692.96leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.5

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MRRASKVMTEQEARQILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS*

>peptide 2 (45 aa)
DILRSNFLLWFLYLLSNFFIFPLFIKSWKLHILHSLDIIFLFRFH*

Sequence

>CNT0002650
GATATTTTAAGGTCTAACTTTTTACTGTGGTTCCTTTATCTGTTATCAAATTTTTTTATATTTCCTTTGTTCATAAAGAGCTGGAAGTTGCATATCCTTC
ATTCATTAGACATTATTTTTCTCTTTAGATTTCATTAATGAGGATAGCAAGCTAAGCTATTTTCTCATGTTGAAGTCTGACAATATGCAACATTGTTTTT
AAACAGCTTAGGTCTCCAAGTATTGCAATATAACATCTGATACTGAACGGAACAAGTTTACCAAAATGCCTCAAAAAATGGTGTTGCACAAGAGACAATT
CAAAATACTATGCGCAGAGCTAGCAAGGTGATGACAGAGCAAGAGGCTAGGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGA
AATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAGG
CAAGAGCCAGGGTACCCCTAGTTGAGAACTTGCATTTTCACCATTTTATAACCCTTGTGTAATCATTTTTGCCTCCAAGTTGTTGTATACTATTTGCATA
ATCAGAAGTTTCTGAACTAAATTTTATTATTATCAAAATTGTAAATGATTAGTTTGGGATTGACTGCCAATAAAGGCTACTATAAAATGAAGTTACATTA
TTATTTTTAACATGATTAAAATTAGAATGTGGTAAAAAAATAGTTGTACGTTTCATTAACTTGATTGATGTCAGAATTTTTGTATCTTTCACTTTCGGTT
TATCATTGCTAATATTCACACTCCAGAAGTGTTCA