Detailed information on CNT0002653 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002653

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)2.5812.6131.76300.7621.3980.8640.1081.0232.7431.3091.4871.1360.5060.204leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.20.40.60.811.21.41.61.822.22.42.62.83

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MHLSLSHTDPTPPQVREAANLAKEVCRSTIQSCRFVVPSHLHGHRHWSSALTFGTSRQSVTHIFFGSNFVTVTKCKEVEREFFKVS*

>peptide 2 (80 aa)
MLSMPLVASMFLLEAFCILSLSHKVIKTKHERKEKKFLIRRTKYTLEYKSNSSEHNYNSRSYHELYSFDVFGQIHPYFPP*

>peptide 3 (40 aa)
MQFLRLDGFVFTHGGCRLLIILCFQCHWWLQCFFWKLFAF*

>peptide 4 (44 aa)
MYFLLWISPRYWWVILVWVLLLICIRLLTFRNQVMRIDRKLVFF*

>peptide 5 (33 aa)
MNCRFWSVQCPFLLTMKLLNINLIGRYVLIYLF*

>peptide 6 (31 aa)
MLFNMWSHFVVLICVLQVCFWTYFEMNKPFI*

>peptide 7 (30 aa)
MITFKFLVLQGNGYFVRFGNCSGKIVVIAP*

>peptide 8 (57 aa)
MEILYKQHLKGLKPPFQINTSAPFFLAFPFRLINSPITNSLIFFNYSIIIPSSTHST*

Sequence

>CNT0002653
AATAATTAAAATTATTTAACGACAGTCCTATAAAAATCATCTTTAAAAGCAACTGTTCAAAGACCATTTTTAAAAAACCGTCTTTCAAATCAAGTGCTGC
CTTCCCATTTTTGCTATCATTGCCTTTGGCTCATCCTCTCTCAGTCTCTCATGCATCTCTCTCTTTCTCACACTGACCCAACTCCACCACAAGTTAGAGA
AGCCGCAAATCTAGCCAAAGAAGTTTGTAGATCTACCATTCAAAGTTGCAGATTTGTCGTCCCCTCCCACCTCCATGGTCATCGTCATTGGAGTTCAGCG
CTAACTTTTGGAACATCGCGCCAGAGTGTTACTCACATTTTCTTTGGATCCAATTTCGTTACCGTTACCAAATGCAAAGAGGTTGAACGGGAATTCTTCA
AGGTTTCTTGACAAGGCAGCTCTACAATTGAAAGAAGGTAGTTTTCCAATTGACTGATACTAATGAACTGTCGCTTTTGGAGTGTACAGTGTCCCTTCTT
ACTGACTATGAAATTGCTAAACATTAACTTGATTGGGAGGTACGTGCTGATTTACTTGTTTTAGTATCTGGGATATTGCTGGGAAAATGTAAGTGTATAG
ATGTTATTTAACATGTGGTCACATTTTGTAGTGTTAATTTGTGTCTTGCAAGTATGTTTCTGGACCTATTTTGAGATGAATAAGCCATTCATATGAGATC
TTAATGTACTTTTTGTTATGGATTTCCCCTCGGTATTGGTGGGTGATATTGGTTTGGGTATTACTGTTAATATGTATTCGACTTCTAACATTTAGGAATC
AAGTAATGAGAATAGATAGGAAATTGGTATTTTTTTGAATTTATAATAGAAAAATCCCCTTACTGCCGCTATTAGGTAGATCAATAACAAGGAATTGATA
ACAAGATAGAAAAATAATGGAAATACTATACAAACAACACTTAAAGGGACTGAAACCTCCATTCCAAATCAATACCTCTGCTCCCTTTTTCTTAGCTTTC
CCCTTTAGATTAATTAACTCACCAATAACAAACTCCCTTATCTTTTTTAATTATTCTATTATAATCCCTAGTTCTACTCATTCAACTTAAACATTAAGTT
ATAAGAAGATAAATCCAATTCTCTTTTATTCTTGCTCATCATTGTCCTGTCGTGGCTCTTGTGATTCTTCTTTCTAGTGCATACATAGGTAACTGGAGGT
CTAACATAACACTTTTGTGTTTTAAGAACTATGTATTTGGATTATAAATATGGTTGTATGTAAAATTTGTAAAGAGTTCTTTGTTATGTTAAGAATTTGT
GTAATTATTTCCTAGTTAGGTTGCCTTGTTTAGTGTAACCAAATATTGGATGTTGTAATTGTGGAAATAGTTATGATGCTAGATTGCTAGATGTAAAGGA
TGTGGATGTATGGGTTTTAAAGGGAAGATGGATTTTTCTATTCTACATGCAGTTTTTAAGGTTGGACGGTTTTGTTTTCACTCATGGAGGATGTAGGTTG
TTAATTATTTTATGCTTTCAATGCCATTGGTGGCTTCAATGTTTCTTTTGGAAGCTTTTTGCATTTTAAGTCTTTCTCATAAGGTGATTAAAACTAAGCA
TGAAAGAAAGGAGAAGAAGTTCTTGATTAGGAGGACAAAATATACTCTAGAATATAAAAGTAACTCATCAGAACATAATTATAACAGCAGAAGCTACCAC
GAATTGTATTCTTTTGATGTCTTTGGTCAGATCCATCCCTATTTCCCTCCATGACCATATTTTTGTGGGTTTTTTTAGCACATGGTGAGGATAATTCCTT
TGTTTTCCTTCTATAGTGAATTCTAGGGTCAACCATCAACTAAATAATAGGTGGTGCACCAATGTATCACCATCATAGTGTTCTTTTATAAAACTATTAC
CTCTAAATTAGATTGTTGTGATTGTTTTAAAATGATGTGACATACTTGTTTGCTTTTAGCTGAGGCATGATAGTCACTTTTTTTTCTTCATCACATTGAA
ACTTTTATATTCATGATATAGTTCCTCATCTTTCTTATTTATTAATTGTAAAACTTGAAATATTATGATAACATTTAAATTTCTTGTTTTGCAGGGAAAT
GGTTACTTTGTTCGGTTTGGTAATTGCTCAGGCAAGATTGTGGTTATAGCTCCCTAAGGCTAATATCATTCCATAGTTGAATTAAATATACTTTGTCAAG
TATAAAAAAGTTGTGTAGGAATCTAGATGATTTACTTAGAGCACCAATTAAATTACATAAACTCTGGTGTAATGAAACTTTGATGCGAAGATACCCAATG
AAGATATTTAACCATTGGAGAGAATATTGTATTTGGATTGGTGTAATGAAACATATATGTATTTGATTCTAATATATTTTTTGTCACTCTAATCTTAATA
ATTATGGTTTTGGTCCCT