Detailed information on CNT0002658 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LDD8|MCCB_ARATH, E-value = 4e-32

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002658

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIKFQTIVKKLLSHPKDLCIITSSRNIFCFCS*

>peptide 2 (83 aa)
MVYLECKFQNLFCPKICGYHSAMVFSRWSQHPPLQKFSQGACSSNTNPLYPSELPLPNPSSHLQVVFKSMYDPCALTMVLPKH*

>peptide 3 (49 aa)
MLEKNRMKKLHGPAGGSIYNYAIKYIYEYEQSRKKSSNEIVINIQSNQS*

>peptide 4 (54 aa)
MVGGSFGAGNYAMCGRAYSPNFLFLWPNARISVMGGAQVIYISSLMSYDSLQER*

>peptide 5 (44 aa)
MTKAFIKEATKFETYQVLNISMNDQSIQRKTTKEEINSKSKTEI*

>peptide 6 (36 aa)
MREKQVLITQQLGFGMMESLIQRIQEKSLVYPSLPP*

>peptide 7 (41 aa)
MQDKVIKIGKREIQTQFILVRPLPGPTSSSQAIHLRFSLIL*

>peptide 8 (32 aa)
MPDNRLPVEKCLFQKMLKIFKNLFIINLKIML*

>peptide 9 (47 aa)
MVLHSSFYPPVNSPCSFHSLTTLTIVSLIILTAKLRDVFFFTISVLL*

Sequence

>CNT0002658
GCAAGTTATAACTTATTCTTTACTCTTTAGCTGTGTATAAACTTAACTACAAAGGCAGAGTAAGTTTATCTACTTGTAATTATAAGTGTCTTGGAAGTTG
GAATGTGATTCCATTTGGGCAAGTACGTTTTCCTGCATGAAAGAAAGAATTGGAGAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCA
GGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGTAATATACA
TCTCATCACTCATGAGTTATGATTCTTTACAAGAAAGATAAATTTTTGGCATTGATTGTTCCAGAACATTGCTTTGCATGGTTATTGTTCTGTACTTAAT
TTGTGAGATACATCAGTACATAGCATGCATGTTTTGCATGTTCTCTCCATTCTAAATCAAACTGGATTTAAAGATTTGATTGGTCATTAGTTTGATATTC
ATCTGGTTTGTGGGGGGTTTGGAATGTGATCATAAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCA
AGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCAT
TGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAAATT
TCAAAATTTATTCTGCCCTAAAATATGTGGTTATCATTCAGCAATGGTGTTCTCAAGATGGTCTCAACATCCTCCACTTCAAAAATTTTCTCAAGGAGCA
TGTAGTTCCAACACAAACCCTCTTTATCCATCAGAACTCCCACTTCCAAATCCTTCAAGCCATTTACAAGTGGTGTTCAAATCAATGTATGACCCGTGTG
CCTTAACCATGGTTCTCCCCAAACATTAACATTCTCCCCATTTTCTAGCTTCCACCTCACACCTTCCTTAAACATCATTTTGGAAAACAATATGCTTCGC
CACTAAGAATATGATGGTTATTACCTAAGCCAACACCCATAAAATCCCTTTTAGGGAAGTATTTGGCTTTGAATACTCTTGTTGACAAAGCATTGGGTTT
TGATATAAATCTCCACCCTTGTTTTCCTATCATGGTCAAGTTGAAAGCATAGATATTTCGGAAGCCTAAGCTCCCCCAAGCTCCATTGAGACACATAATT
TTTTTCCCAAGCTAGCCAATTCATTCATTTTGATTCCCTATTACTTGACCCCCCACCAATATGAGTTATTTTGGACAAGTGACCTCAATAACTTAAGGGG
GGGAGGGGTGAATTAAGTTAAAAAATTTCTCGTTTAATTGACTTCTAAATCTCTTTTTAAATCTATATGTTAAGAATATTAAAAATAAAGATAAAAATTA
TATCAATAGAATACTTCAAGTGTACAAGATAAATAAAATATGCAAGATAAAGTAATCAAGATAGGGAAGAGAGAAATACAAACTCAGTTTATCCTAGTTC
GGCCACTTCCTGGGCCTACGTCCAGTTCTCAAGCAATCCACTTGAGATTTTCACTAATTTTGTAAAAATACTTTTTACAACTTTTGAACATTTGAGAGAT
CCCTTTCCCTTGTGTTCAGGAAACTCATAATTCAAGAGACAAACAATCTCTTGATCTCAATAAGTTTTTAAATAAAGTACAAATGTTTTCTCTCTTTTAG
AGAAAAAGATACAAGATGAAGTTCTTAGAAGAATCCTTAATTGATTTGCAAGTGTTTGATCAATGATTTATTTTTTAGAGATAAGACAATAAGGTTCTGA
AAAACTCTTTTAAAAACTTTCGTAGATAAGTCACATATTTATAGGCCCTTGGTGATTTTTCAAAAACTTATGAAGGGATGTGACTTTTCAGAATAATTTT
TAAAATTTTCTCACTGGTAATCGATTACAACTCTTTGGTAATCGATCACACACTTATGTAATGAGGAGTCATGACTTTTCAATTTGAATTTTTGTAGTTC
CGTTACTAGTAATTGATTACAGACAAGTGGTAATTGATTACAACTTTCAAATTTCAAATTTTAAACTTTCTAAAAAAGCTTTTTAAAATAATTTTTCTTC
TGGTAATCAATTACAATGCCTGATAATCGATTACCAGTGGAAAAATGTCTTTTTCAGAAAATGTTAAAAATATTTAAAAACCTTTTTATAATCAATTTAA
AAATTATGTTGTGATGTCAAACCTTTGCAATCACTAAGAGACTCTTCTAACAAAGATAGACTAAGATTTAACTTTCTTCTTGATCTTTGTTTTCTTAGTC
TTGATTTGGACTTGAAATAAAACTTGTGTTGCTTTTGTCTTGACATCATCAAAACCTTCATACACATACATTCACATTCTCCCCCTTTTTGATAATGACA
ACCAATTGAAATCATTTACTGAAAAATATTTCTTTTGCGAGACGATCACTCCCCCTTAATTTTGCAATCATTGCTTAGCAGAAAATATTTTCAAAAAGGA
TTGCAAAAAAAAAATATATACCCTCTACTTGTACCTTACATGATTCTCTCCCTCTTTGGCAACATAAAAAAGACGAAAGCACCAAAATAGAAACAATCAT
TCATAATAACCAATCAATCACAGAGGAATCAACCAAGTGCTAAACATACCAAACAGAGAAAGTCCAAAATAATATTTATAAATGACCAAAGCATTCATAA
AAGAAGCAACCAAGTTTGAAACATATCAAGTCTTAAACATTAGTATGAATGACCAAAGCATTCAAAGAAAAACAACCAAAGAAGAAATAAACAGCAAGTC
CAAAACAGAAATATAAAGAACCAAATCCAAAATAAACCCAATGCAGAAAGTTTGGAATATCAAGGAAATTAAAGACAGATAATGTTAGAAAAAAATAGGA
TGAAAAAGCTTCATGGACCCGCCGGAGGATCAATATACAATTATGCAATAAAATACATTTATGAGTATGAACAATCACGAAAAAAATCATCAAATGAAAT
TGTTATAAACATTCAAAGTAATCAATCATAAACAAGCAAAACAACTACTTCATTCAACCAAAGTAAACAATCATCATAATCAATCATGAAAAATAACTAT
CAACCACAATCATTTTACTCAACCAAAGTAAACAATAATCATAATCAATCATGATAAATAATCAAAGTTAAACATTCATCATAATCATCATAATTAAGCA
TGACAATTAAACAATATAAACATCCAAAGTGGCTAGGATTCTAAGTTATTTAGGTCTGAGTCCTAATTCTCTTCTAATAGAAAAGAAGTTTTCTTTGGGG
AGAGGTTTTGTGAAGATATCAACTAACTAATTTTTTGTGTCAATAAATTCTAATATGCAATCCCCTTTTTGAACATGATCACGAAGGAAGTGATGCCTTA
TTTCAATATGCTTTGTTCTAGAGTACAGAATATGATTTTTGGATAGATTAATTGCACTTGTATTGTCACATCGGATAGGTATATGATCAAGTTTCAAACC
ATAGTCAAAAAGTTGTTGTCTCATCCAAAAGATTTGTGCATAATAACTTCTAGCAGAAATATATTCTGCTTCTGCAGTTGATAAGACAACACTATTTTGC
TTTTTACTATGCCATGATACTAGAGCAGAACCAATAAAATGACAAGTGTCACTAGTACTTTCTCTATCAGTTTTGCATCAGAGTATCCTACTAAGTTATA
AGAGGAATTCTTAGGATACCATAACCCTAGATTTATAATGCCCAACAAATATCTCATTATTCTTTTAATGACACTTAGGTGAGATTCTTTGGGATTTGCT
TGATATCTTACACACATACAAACACTAAACATTATATGAGGTCTGCTTGTTGATAAATAAAGAAAAGATTCGATCATAGCCAAGCCTCAACAGTTCCAAT
TCAAAATGATCAGCCACTAAAAATTGCCTGGGAGCAATTTCATGGTTTTGCACTCTTCATTTTATCCTCCCGTGAACTCACCATGTTCCTTCCATTCTCT
CACAACCCTCACAATTGTTTCACTAATAATCTTAACAGCCAAACTTAGAGATGTGTTTTTTTTTACCATTAGTGTGTTGTTATAATTTGCTCCTTATATG
AACACACAATATGTGTGTGTGTAAGTGTAGTATTTTAATAGTAATTTATTTAAAGTAAATTACACTAATTAGCCCTAAGCCTTTGTAAATTTACACAAAT
TCTCCTATTATTTAGAACAGTTACAATAACCTCCCTTATAAGAGAGTTCAAAGTAATATTTTTCAAAAATTAAAGGGATTAATGTAGGAATAGTTGGAAA
CCGGAAGAGCTTGTGTCACTTCACAAAACATCATGGGAAGTTAATTTGATTTACTCCTTTGTTTATTAACTATAACACCAACTCCATTTATTTCTGGTCG
CATTTCTTATTATATCTTATGTTTTCTCTCTTTTCTTCCTATCCCTCTCTTACCACTCAAGATGGAATACAAATCCCAAAAAGTATACAAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G12640.1 Uncharacterized protein protein coding CNT0002658 157 80 CDS Trans