Detailed information on CNT0002659 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
: nothing found

Expression of CNT0002659

Peptides detected in this lncRNA

>peptide 1 (54 aa)
WFLCTLILLTCSIHLAHSVLQVLSLSSTTTASPRVNILQSVTKNQVFFSNRAAL*

>peptide 2 (35 aa)
VVSMYFDIADLFDPFGSFSASSAFTIIYNNSITQS*

Sequence

>CNT0002659
GGTGGTTTCTATGTACTTTGATATTGCTGACTTGTTCGATCCATTTGGCTCATTCAGTGCTTCAAGTGCTTTCACTATCATCTACAACAACAGCATCACC
CAGAGTTAACATATTACAAAGTGTCACCAAAAACCAAGTCTTTTTCAGCAACAGAGCTGCTCTGTAGTAAATATCATAGCTCATGTTCATGAATTGGGGT
CAAACTCATTAGAGACCAAAACTGGGGGACATCCTTTTTTACTGTTTGCTTCAATTGCTGAAAACCCCTAATTTTTCCTATTTTTGTTACCAAAAGTGAT
AAAATTTTAAATTGGGTGACCTAAACAAGAAACCCAAGTCAGTGAAAATGTACAGATCAATTAGATCAGTGTGAAATCTACCAACTTTACCAGGTAAATA
GTTCCCAAGGTTTAATTTTGGAGAAAAAAAATTTAGAAAAAGGGAATCTGAATTATGATGTGAATTACCTCAGGGTATGGAGGAAGTGATTGAGGTTTGT
TAACCTCTTCAGTGGCCATTGAAGTAGCAGGTTGGGAAAAAGTTCCAAAGCTTGCACAGCACTCTCAATCAACCCACCCACTCAGAAAAATACAAACTTT
AACAGAGGCAGGTTCCAATTTTTTCCCAGGAAAGTGAAGGATTATGGACGGCTAGGAATCACCCAAAAGACAATGATCG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G41220.1 Uncharacterized protein protein coding CNT0002659 1670 640 CDS_UTR Trans
GLYMA02G41230.1 HMG-Y-related protein A protein coding CNT0002659 1760 640 CDS_UTR Cis
GLYMA02G41230.2 HMG-Y-related protein A protein coding CNT0002659 1760 640 CDS_UTR Cis
GLYMA14G39590.1 Uncharacterized protein protein coding CNT0002659 644 636 CDS_UTR Trans
GLYMA14G39600.1 HMG-Y-related protein B protein coding CNT0002659 763 626 CDS_UTR Trans
GLYMA14G39600.2 HMG-Y-related protein B protein coding CNT0002659 763 626 CDS_UTR Trans