Detailed information on CNT0002660 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LS88|PP250_ARATH, E-value = 1e-16

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002660

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.733.7413.313000.3720000.24300000leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.754

Peptides detected in this lncRNA

>peptide 1 (87 aa)
LLSSVGYLAKKNILVFENKRQSLQQTSAVADSLFYQEADTNSDHNESSQEVKWIPPPNFCIKGNFDVFLKDKSGTGFGVIFSDNFCY*

>peptide 2 (59 aa)
MNAKGVAPVNSTYGTLINAYSKGGLKEEALARLQRMQSQGMEPDEVTMGIVVPTFTTTLR

Sequence

>CNT0002660
CTTTTGTCATCTGTGGGCTATTTGGCAAAAAAAAATATTCTGGTTTTTGAGAACAAAAGGCAATCTCTGCAGCAAACTTCGGCAGTAGCAGATTCTTTAT
TTTATCAGGAGGCTGACACAAATTCTGATCACAATGAGTCCTCTCAAGAGGTAAAGTGGATCCCTCCTCCGAATTTCTGCATAAAAGGAAACTTTGATGT
CTTCTTGAAAGATAAAAGTGGAACAGGTTTTGGGGTAATTTTTAGTGATAATTTCTGCTACTGATTTTTGGGGCCCTGTGGAGAGTCTGTGGAGCAAAAT
GAATGCAAAGGGGGTTGCTCCTGTGAATTCCACTTATGGGACCTTGATTAATGCTTATAGCAAAGGTGGACTCAAAGAGGAAGCACTAGCGCGGTTACAG
AGGATGCAGAGTCAAGGAATGGAGCCTGATGAGGTCACCATGGGGATTGTTGTACCTACGTTCACGACTACATTAAGA