Detailed information on CNT0002671 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZW33|TIM10_ARATH, E-value = 3e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002671

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.5917.6578.53620.8695.9982.0783.2534.38512.53418.17818.85114.93817.08423.89.863leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02468101214161820222426

Peptides detected in this lncRNA

>peptide 1 (102 aa)
NYIINKLFFFSSFFHNFITFSSSFLNPSLSFSLVRALSLSVFVNPLGLCVLCCESRFNTSTRPIGIFRVQWLPTSRPLPLIKNRYLEWLKRRWNIGSNYS
TR*

>peptide 2 (45 aa)
MASNISPSAFDKEQIFGMAEKEMEYRVELFNKMTQTCFNKCVDNR*

Sequence

>CNT0002671
AATTATATAATTAATAAACTATTCTTCTTCAGTTCATTCTTCCACAATTTTATCACTTTTTCTTCATCTTTTCTGAACCCTAGCCTAAGCTTCTCACTTG
TTCGCGCTCTCTCTCTCTCTGTCTTTGTTAACCCTCTCGGCCTCTGTGTGTTGTGTTGTGAATCGAGATTCAACACTTCAACTCGGCCCATTGGGATTTT
CAGGGTACAATGGCTTCCAACATCTCGCCCTCTGCCTTTGATAAAGAACAGATATTTGGAATGGCTGAAAAGGAGATGGAATATAGGGTCGAATTATTCA
ACAAGATGACCCAGACCTGTTTCAATAAGTGTGTTGACAATAGGTGACTAATCTAATTGGTCAGCTGCTTGGTTCTGGGAGGCCTCCAATGTAATCCAAG
TGTTTTGTATTTTCTTTTGCGGTTAGCAACCAGTGAGCTATGTCTACGATATTATTAGTTGCTTCCCAAGGAAGAGAAATTTAATGCTTTGCAGAGTCTT
TATTTTTTACCATGACTATTTTGATTTTTGAGGTCAATATGCTTTGTTTAGAAAGGGACTGATGAGTTTTGAGGTAGCCAATGGTGAACAATAAAAATAA
TTTTAGATAAATATGGTCATTCTTTGTTTCTAATTTGTGGCTTTTTGGCTCTACCCGCAGTTTATCATATTTTATATCAAATTTA