Detailed information on CNT0002680 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8VZ49|ADHL4_ARATH, E-value = 3e-06

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0002680

Peptides detected in this lncRNA

>peptide 1 (56 aa)
FLLPLFPCPCLSNSALISNLSITDPTIPACGLWHRNREKKKGILWKIKSTTGEVMR*

>peptide 2 (47 aa)
FSFSLFFLAHVSQIQLLLVISQLLIPPSLLVACGTETEKKKKESFGK*

Sequence

>CNT0002680
TTTTCCTTCTCCCTCTTTTTCCTTGCCCATGTCTCTCAAATTCAGCTCTTATTAGTAATCTCTCAATTACTGATCCCACCATCCCTGCTTGTGGCTTGTG
GCACCGAAACAGAGAAAAAAAAAAAGGAATCCTTTGGAAAATAAAGTCCACTACTGGAGAAGTGATGAGATAAAAAATGTCTTCTAGCTTGGACACGCAG
CACCAAGCTTCTAAACAAAAGTAACAGAGCAAATAAGTTTGTGGCCGCTTTATCATTTTAAAGTCCGAATAAAAGAGCAATAACCAAAGCTTTCACTTAC
AGAGAGACCCACAGCACCTAAACCAAAGACAGCTACAGCTGAACCAAAATGCACATCAGCGGTATTCCAAGCAGCTCCAACACCTACACATGACACACAT
TATCAATTTGGTCTAAACTACTCATGCTCATTTGATCACGTCATTTACTATTGTCACAAATATATAGTTCACATAACATGATTATTGATGCATCATTGAT
CTAATACTCAGCCAAACATATGATGAGTTAAATGTAATTAATGGTAAGGGTGTTGGTAGTGTGGTTTGATTTGAATTTTTGCATAATAAATCATATGAAT
CAA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G28850.1 Uncharacterized protein protein coding CNT0002680 914 338 CDS Cis
GLYMA01G28880.1 Uncharacterized protein protein coding CNT0002680 473 260 CDS Trans
GLYMA03G08170.2 Uncharacterized protein protein coding CNT0002680 283 122 CDS_UTR Trans